Evidence map›Paper›PMID 38254963›Full record

ArticleGenes2024

Estimation of Genetic Diversity and Number of Unique Genotypes of Cassava Germplasm from Burkina Faso Using Microsatellite Markers.

Monique Soro, Serge Marie Felicien Wend-Pagnagdé Zida, Koussao Somé, Fidèle Tiendrébéogo, Daniel H Otron, Justin S Pita, James B Néya, Daouda Koné

Open access · goldAbstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Monique SoroCentral and West African Virus Epidemiology (WAVE), Pôle Scientifique et d'Innovation de Bingerville, Université Félix Houphouët-Boigny (UFHB), Bingerville 08 BP 2035, Côte d'Ivoire.
Serge Marie Felicien Wend-Pagnagdé ZidaLaboratoire de Génétique et de Biotechnologies Végétales, Institut de l'Environnement et de Recherches Agricoles (INERA), Ouagadougou 01 BP 476, Burkina Faso.ORCID 0009-0006-9389-4091
Koussao SoméLaboratoire de Virologie et de Biotechnologies Végétales, Institut de l'Environnement et de Recherches Agricoles (INERA), Ouagadougou 01 BP 476, Burkina Faso.
Fidèle TiendrébéogoLaboratoire de Virologie et de Biotechnologies Végétales, Institut de l'Environnement et de Recherches Agricoles (INERA), Ouagadougou 01 BP 476, Burkina Faso.ORCID 0000-0002-3619-3268
Daniel H OtronCentral and West African Virus Epidemiology (WAVE), Pôle Scientifique et d'Innovation de Bingerville, Université Félix Houphouët-Boigny (UFHB), Bingerville 08 BP 2035, Côte d'Ivoire.
Justin S PitaCentral and West African Virus Epidemiology (WAVE), Pôle Scientifique et d'Innovation de Bingerville, Université Félix Houphouët-Boigny (UFHB), Bingerville 08 BP 2035, Côte d'Ivoire.
James B NéyaLaboratoire de Virologie et de Biotechnologies Végétales, Institut de l'Environnement et de Recherches Agricoles (INERA), Ouagadougou 01 BP 476, Burkina Faso.
Daouda KonéLaboratoire de Biotechnologie, Agriculture et Valorisation des Ressources Biologiques, UFR Biosciences, Université Félix Houphouët-Boigny, Abidjan 22 BP 582, Côte d'Ivoire.
Institut de l'Environnement et Recherches Agricoles · BFUniversité Félix Houphouët-Boigny · CI

Funding

Bill and Melinda Gates Foundation and The United Kingdom Foreign, Commonwealth and Development Office OPP1082413
6 · The paper itself

Abstract

Genetic diversity is very important in crop improvement. This study was carried out to assess the genetic diversity and the number of unique multilocus genotypes (MLGs) in a cassava collection in Burkina Faso. To achieve this objective, 130 cassava accessions were genotyped using 32 simple sequence repeat (SSR) markers. The results revealed that among these markers, twelve (12) were highly informative, with polymorphic information content (PIC) values greater than 0.50; twelve (12) were moderately informative, with PIC values ranging between 0.25 and 0.50; and eight (8) were not very informative, with PIC values lower than 0.25. A moderate level of genetic diversity was found for the population, indicated by the average expected heterozygosity (0.45) and the observed heterozygosity (0.48). About 83.8% of unique multilocus genotypes were found in the cassava collection, indicating that SSR markers seem to be most appropriate for MLG identification. Population structure analysis based on hierarchical clustering identified two subpopulations and the Bayesian approach suggested five clusters. Additionally, discriminant analysis of principal components (DAPC) separated the cassava accessions into 13 subpopulations. A comparison of these results and those of a previous study using single nucleotide polymorphisms (SNP) suggests that each type of marker can be used to assess the genetic structure of cassava grown in Burkina Faso.

Indexed as

ManihotBayes TheoremBurkina FasoGenotypeMicrosatellite RepeatsPolymorphism, Single Nucleotidecassavagenetic diversitygenotypespopulation structureSSR markersunique multilocus genotypes

Identifiers

PMID38254963
PMCPMC10815475
OpenAlexW4390615117

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.