Evidence map›Paper›PMID 38254010›Full record

ArticleMolecular medicine (Cambridge, Mass.)2024

Comprehensive analysis of m6A modification in lipopolysaccharide-induced acute lung injury in mice.

Chenzhen Xu, Congkuan Song, Wenjie Wang, Bohao Liu, Guorui Li, Tinglv Fu, Bo Hao, Ning Li, Qing Geng

Open access · goldAbstract read
In one paragraph

Article in Molecular medicine (Cambridge, Mass.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Chenzhen Xu *Department of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, China.
Congkuan Song *Department of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, China.
Wenjie Wang *Department of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, China.
Bohao LiuDepartment of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, China.
Guorui LiDepartment of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, China.
Tinglv FuDepartment of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, China.
Bo HaoDepartment of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, China.
Ning LiDepartment of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, China. md.lining@whu.edu.cn.
Qing GengDepartment of Thoracic Surgery, Renmin Hospital of Wuhan University, Wuhan, 430060, China. gengqingwhu@whu.edu.cn.ORCID 0000-0003-4515-5084
Wuhan University · CNJilin University · CN

Funding

Fundamental Research Funds for the Central Universities 2042021kf0081Innovative Research Group Project of the National Natural Science Foundation of China 2020CFA027National Natural Science Foundation of China 81770095National Natural Science Foundation of China 82102269
6 · The paper itself

Abstract

backgroundN6-Methyladenosine (m6A) methylation is the most prevalent post-transcriptional modification in mRNA, and plays significant roles in various diseases. Nevertheless, the precise functions of m6A modification in the formation of ALI remain unclear. In this study we explore the transcriptome distribution of m6A methylation and its probable roles of in ALI.

methodsLipopolysaccharide (LPS) was utilized to establish an ALI mouse model. Real-time qPCR, Western blotting and m6A dot blot were utilized to assess m6A methylation level and the expression of m6A methylation enzymes. MeRIP-Seq and RNA-seq were utilized to explore differential m6A modifications and differentially expressed genes in ALI mice. The hub genes and enriched pathways were assessed by Real-time qPCR and Western blotting.

resultsOur findings showed that overall m6A methylation level was increased in ALI mice lung tissues, accompanied by lower levels of METTL3 and FTO. Notably, the protein expression of these methylases were different in various cells. There were 772 differently expressed m6A peaks in ALI as compared to the control group, with 316 being hypermethylated and 456 being hypomethylated. GO and KEGG analyses demonstrated these differentially methylated genes were associated with the calcium signaling pathway and cAMP signaling pathway. Furthermore, we identified 50 genes with distinct m6A peaks and mRNA expressions by combined analysis of MeRIP-Seq and RNA-Seq. KEGG analysis also demonstrated that these overlapped genes were closely associated with the calcium signaling pathway, cGMP-PKG signaling pathway, etc. Besides, Western blotting results demonstrated that the protein expression of Fibronectin leucine-rich transmembrane protein 3 (Flrt3) as well as the calcium signaling pathway and cGMP-PKG signaling pathway, increased significantly after ALI.

conclusionsm6A modification was paramount in the pathogenesis of ALI, and provided a foundation for the further investigation in the prevention and treatment of ALI.

Indexed as

Acute Lung InjuryLipopolysaccharidesAdenineAnimalsCyclic GMPGene ExpressionMiceRNA, Messenger6-methyladenineAdenineCyclic GMPLipopolysaccharidesRNA, MessengerALIFTOm6A methylationMeRIP-SeqMETTL3

Identifiers

PMID38254010
PMCPMC10804706
OpenAlexW4391111066

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.