Evidence map›Paper›PMID 38253530›Full record

ArticleNature communications2024

Structure of the M. tuberculosis DnaK-GrpE complex reveals how key DnaK roles are controlled.

Xiansha Xiao, Allison Fay, Pablo Santos Molina, Amanda Kovach, Michael S Glickman, Huilin Li

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Xiansha XiaoDepartment of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA.
Allison FayImmunology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0001-5957-5376
Pablo Santos MolinaImmunology Program, Sloan Kettering Institute, New York, NY, USA.
Amanda KovachDepartment of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA.ORCID 0000-0002-1527-1642
Michael S GlickmanImmunology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0001-7918-5164
Huilin LiDepartment of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA. Huilin.Li@vai.org.ORCID 0000-0001-8085-8928
Kettering University · USVan Andel Institute · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Structure Biology of Mycobacterium Tuberculosis Pup-Proteasome PathwayR01AI070285 · NIAID · VAN ANDEL RESEARCH INSTITUTE · PI LI, HUILIN · 2007 to 2022
$6.5M
Rip1 controlled stress resistance and virulence in Mycobacterium tuberculosisR01AI138446 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI GLICKMAN, MICHAEL S · 2019 to 2023
$2.3M
NCI NIH HHS P30 CA008748NIAID NIH HHS R01 AI070285NIAID NIH HHS R01 AI138446
6 · The paper itself

Abstract

The molecular chaperone DnaK is essential for viability of Mycobacterium tuberculosis (Mtb). DnaK hydrolyzes ATP to fold substrates, and the resulting ADP is exchanged for ATP by the nucleotide exchange factor GrpE. It has been unclear how GrpE couples DnaK's nucleotide exchange with substrate release. Here we report a cryo-EM analysis of GrpE bound to an intact Mtb DnaK, revealing an asymmetric 1:2 DnaK-GrpE complex. The GrpE dimer ratchets to modulate both DnaK nucleotide-binding domain and the substrate-binding domain. We further show that the disordered GrpE N-terminus is critical for substrate release, and that the DnaK-GrpE interface is essential for protein folding activity both in vitro and in vivo. Therefore, the Mtb GrpE dimer allosterically regulates DnaK to concomitantly release ADP in the nucleotide-binding domain and substrate peptide in the substrate-binding domain.

Indexed as

Mycobacterium tuberculosisTuberculosisAdenosine TriphosphateHumansNucleotidesPolymersAdenosine TriphosphateNucleotidesPolymers

Identifiers

PMID38253530
PMCPMC10803776
OpenAlexW4391111059

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.