Evidence map›Paper›PMID 38252560›Full record

ArticleeLife2024

Double and triple thermodynamic mutant cycles reveal the basis for specific MsbA-lipid interactions.

Jixing Lyu, Tianqi Zhang, Michael T Marty, David Clemmer, David H Russell, Arthur Laganowsky

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Molecular Basis for the Activation ofJournal of the American Chemical Society · 2025
    Article
  2. Article
  3. Revealing the Fates of Proteins in the Gas Phase.International journal of mass spectrometry · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Jixing LyuDepartment of Chemistry, Texas A&M University, College Station, United States.
Tianqi ZhangDepartment of Chemistry, Texas A&M University, College Station, United States.
Michael T MartyDepartment of Chemistry and Biochemistry and Bio5 Institute, The University of Arizona, Tucson, United States.ORCID https://orcid.org/0000-0001-8115-1772
David ClemmerDepartment of Chemistry, Indiana University, Bloomington, United States.
David H RussellDepartment of Chemistry, Texas A&M University, College Station, United States.
Arthur LaganowskyDepartment of Chemistry, Texas A&M University, College Station, United States.ORCID https://orcid.org/0000-0001-5012-5547
National Institutes of Health · US

Funding

Waters Select Series Cyclic IMS for P41 Native MS Resource Application to Alzheimer's DiseaseP41GM128577 · NIGMS · OHIO STATE UNIVERSITY · PI SOMOGYI, ARPAD · 2018 to 2022
$7.6M
Understanding the role of lipids in structure and function of membrane proteinsRM1GM145416 · NIGMS · TEXAS A&M UNIVERSITY · PI Erin S Baker, Arthur D Laganowsky · 2022 to 2026
$7.4M
Native Mass Spectrometry Guided Structural Biology CenterRM1GM149374 · NIGMS · OHIO STATE UNIVERSITY · PI Vicki H. Wysocki · 2023 to 2026
$5.0M
Unravelling Membrane Protein-Lipid Interactions using Nanodiscs and Mass SpectrometryR35GM128624 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Michael T Marty · 2018 to 2026
$3.6M
Native ion mobility mass spectrometry studies of potassium inward rectifier channels: insight into gating and lipid bindingDP2GM123486 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI LAGANOWSKY, ARTHUR D · 2016 to 2016
$2.2M
Development of high resolution mobility measurements for structural biologyR01GM121751 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI CLEMMER, DAVID E., LAGANOWSKY, ARTHUR D · 2017 to 2020
$1.7M
Innovative Native Ion Mobility Approaches for Transformational Measurements in Structural BiologyR01GM138863 · NIGMS · TEXAS A&M UNIVERSITY · PI CLOWERS, BRIAN, LAGANOWSKY, ARTHUR D · 2020 to 2023
$1.2M
Developing new tools to probe membrane protein-lipid interactions for biomedical applicationsR01GM139876 · NIGMS · TEXAS A&M UNIVERSITY · PI LAGANOWSKY, ARTHUR D · 2021 to 2024
$1.2M
NIGMS NIH HHS DP2 GM123486NIGMS NIH HHS P41 GM128577NIGMS NIH HHS R01 GM121751NIGMS NIH HHS R01 GM138863NIGMS NIH HHS R01GM138863NIGMS NIH HHS R01 GM139876NIGMS NIH HHS R01GM139876NIGMS NIH HHS R35 GM128624NIGMS NIH HHS R35GM128624NIGMS NIH HHS RM1 GM145416NIGMS NIH HHS RM1GM145416NIGMS NIH HHS RM1 GM149374NIGMS NIH HHS RM1GM149374NIH HHS DP2GM123486NIH HHS P41GM128577NIH HHS R01GM121751NIH HHS R35GM128624
6 · The paper itself

Abstract

Structural and functional studies of the ATP-binding cassette transporter MsbA have revealed two distinct lipopolysaccharide (LPS) binding sites: one located in the central cavity and the other at a membrane-facing, exterior site. Although these binding sites are known to be important for MsbA function, the thermodynamic basis for these specific MsbA-LPS interactions is not well understood. Here, we use native mass spectrometry to determine the thermodynamics of MsbA interacting with the LPS-precursor 3-deoxy-D-

Indexed as

ATP-Binding Cassette TransportersLipopolysaccharidesBinding SitesEntropyThermodynamicsATP-Binding Cassette TransportersLipopolysaccharidesABC transporterbiochemistrychemical biologyE. colimolecular biophysicsnative mass spectrometryprotein-lipid interactionsstructural biologythermodynamics

Identifiers

PMID38252560
PMCPMC10945598
OpenAlexW4387096069

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.