Evidence map›Paper›PMID 38252339›Full record

ArticleMolecular biology reports2024

Genotyping SNPs in lignin biosynthesis gene (CAD1) and transcription factors (MYB1 and MYB2) exhibits association with wood density in teak (Tectona grandis L.f.).

Nuzhat Bano, Naseer Mohammad, Mohammad Israil Ansari, Shamim Akhtar Ansari

Abstract read
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In one paragraph

Article in Molecular biology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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  4. Analyzing the defense response mechanism ofFrontiers in plant science · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Nuzhat BanoICFRE-Institute of Forest Productivity, Ranchi, 835303, India.ORCID http://orcid.org/0000-0001-8759-4910
Naseer MohammadGenetics and Tree Improvement Division, ICFRE-Tropical Forest Research Institute, Jabalpur, 482021, India.ORCID http://orcid.org/0000-0002-9031-2053
Mohammad Israil AnsariDepartment of Botany, Lucknow University, Lucknow, 226007, India.ORCID http://orcid.org/0000-0002-2162-7705
Shamim Akhtar AnsariICFRE-Institute of Forest Productivity, Ranchi, 835303, India. shamimansari_1@yahoo.co.uk.ORCID http://orcid.org/0000-0002-8951-1792
Indian Council of Forestry Research and Education · INTropical Forest Research Institute · INUniversity of Lucknow · IN

Funding

Government of India Department of Science and Technology, New Delhi SERB/SB/SO/PS/ 28 /2013
6 · The paper itself

Abstract

backgroundTeak (Tectona grandis L.f.), an important source of tropical timber with immense economic value, is a highly outcrossing forest tree species. 150 unrelated accessions of teak (Tectona grandis L.f.) plus trees assembled as clones at National Teak Germplasm Bank, Chandrapur, Maharashtra, India was investigated for association mapping of candidate lignin biosynthesis gene (CAD1) and transcription factors (MYB1 and MYB2). METHODS AND

resultsThe CAD1, MYB1 and MYB2 were amplified using specifically designed primers. The amplified sequences were then sequenced and genotyped for 112 SNPs/11 indels. We evaluated the association between SNPs and wood density in teak accessions using GLM and MLM statistical models, with Bonferroni correction applied. The teak accessions recorded an average wood density of 416.69 kg.m

conclusionScored SNP locus (B1485C/A) can be developed as a molecular probe for selection of improved planting stock with proven wood density trait for a large-scale teak plantation.

Indexed as

LamiaceaeTranscription FactorsGenotypeIndiaLigninPolymorphism, Single NucleotideWoodLigninTranscription FactorsAssociation mappingBonferroni correctionFamily (genetic) kinshipGLM and MLM modelLinkage disequilibriumPopulation structure

Identifiers

PMID38252339
OpenAlexW4391101588

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.