Evidence map›Paper›PMID 38245722›Full record

ArticleBMC genomics2024

The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary profiles.

Axel Touchard, Valentine Barassé, Jean-Michel Malgouyre, Michel Treilhou, Christophe Klopp, Elsa Bonnafé

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Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Axel TouchardDepartment of Entomology, Cornell University, Ithaca, NY, 14853, USA.
Valentine BarasséBTSB-UR 7417, Université Fédérale de Toulouse, Institut National Universitaire Jean-François Champollion, Place de Verdun, 81000, Albi, France.
Jean-Michel MalgouyreBTSB-UR 7417, Université Fédérale de Toulouse, Institut National Universitaire Jean-François Champollion, Place de Verdun, 81000, Albi, France.
Michel TreilhouBTSB-UR 7417, Université Fédérale de Toulouse, Institut National Universitaire Jean-François Champollion, Place de Verdun, 81000, Albi, France.
Christophe KloppINRAE, BioinfOmics, Université Fédérale de Toulouse, GenoToul Bioinformatics Facility, Sigenae, 31326, Castanet-Tolosan, France.
Elsa BonnaféBTSB-UR 7417, Université Fédérale de Toulouse, Institut National Universitaire Jean-François Champollion, Place de Verdun, 81000, Albi, France. elsa.bonnafe@univ-jfc.fr.
Centre Universitaire Jean-François-Champollion · FRCornell University · USLaboratoire de Microbiologie et Génétique Moléculaires · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVenoms have evolved independently over a hundred times in the animal kingdom to deter predators and/or subdue prey. Venoms are cocktails of various secreted toxins, whose origin and diversification provide an appealing system for evolutionary researchers. Previous studies of the ant venom of Tetramorium bicarinatum revealed several Myrmicitoxin (MYRTX) peptides that gathered into seven precursor families suggesting different evolutionary origins. Analysis of the T. bicarinatum genome enabling further genomic approaches was necessary to understand the processes underlying the evolution of these myrmicitoxins.

resultsHere, we sequenced the genome of Tetramorium bicarinatum and reported the organisation of 44 venom peptide genes (vpg). Of the eleven chromosomes that make up the genome of T. bicarinatum, four carry the vpg which are organized in tandem repeats. This organisation together with the ML evolutionary analysis of vpg sequences, is consistent with evolution by local duplication of ancestral genes for each precursor family. The structure of the vpg into two or three exons is conserved after duplication events while the promoter regions are the least conserved parts of the vpg even for genes with highly identical sequences. This suggests that enhancer sequences were not involved in duplication events, but were recruited from surrounding regions. Expression level analysis revealed that most vpg are highly expressed in venom glands, although one gene or group of genes is much more highly expressed in each family. Finally, the examination of the genomic data revealed that several genes encoding transcription factors (TFs) are highly expressed in the venom glands. The search for binding sites (BS) of these TFs in the vpg promoters revealed hot spots of GATA sites in several vpg families.

conclusionIn this pioneering investigation on ant venom genes, we provide a high-quality assembly genome and the annotation of venom peptide genes that we think can fosters further genomic research to understand the evolutionary history of ant venom biochemistry.

Indexed as

AntsAnt VenomsAnimalsEvolution, MolecularGenomeHumansPeptidesVenomsAnt VenomsPeptidesVenomsAntsChromosome-level genomeEvolutionExpression controlPeptidesTetramorium bicarinatumToxinsVenom

Identifiers

PMID38245722
PMCPMC10800049
OpenAlexW4391045654

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