Evidence map›Paper›PMID 38245528›Full record

ArticleScientific reports2024

High dimensional predictions of suicide risk in 4.2 million US Veterans using ensemble transfer learning.

Sayera Dhaubhadel, Kumkum Ganguly, Ruy M Ribeiro, Judith D Cohn, James M Hyman, Nicolas W Hengartner, Beauty Kolade, Anna Singley, Tanmoy Bhattacharya, Patrick Finley and 18 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Life events extraction from healthcare notes for veteran acute suicide risk prediction.Journal of the American Medical Informatics Association : JAMIA · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Sayera DhaubhadelLos Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Kumkum GangulyLos Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Ruy M RibeiroLos Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Judith D CohnLos Alamos National Laboratory, Los Alamos, NM, 87545, USA.
James M HymanLos Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Nicolas W HengartnerLos Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Beauty KoladeLos Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Anna SingleyLos Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Tanmoy BhattacharyaLos Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Patrick FinleySandia National Laboratory, Albuquerque, NM, 87123, USA.
Drew LevinSandia National Laboratory, Albuquerque, NM, 87123, USA.
Haedi ThelenSandia National Laboratory, Albuquerque, NM, 87123, USA.
Kelly ChoMassachusetts Veterans Epidemiology and Research Information Center (MAVERIC), VA Boston Healthcare System, Boston, USA.
Lauren CostaMassachusetts Veterans Epidemiology and Research Information Center (MAVERIC), VA Boston Healthcare System, Boston, USA.
Yuk-Lam HoMassachusetts Veterans Epidemiology and Research Information Center (MAVERIC), VA Boston Healthcare System, Boston, USA.
Amy C JusticeVA Connecticut Healthcare System, Yale Schools of Medicine and Public Health, Yale University, West Haven, CT, USA.
John PestianCincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Daniel SantelCincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Rafael Zamora-ResendizApplied Mathematics and Computational Research Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA, 94720, USA.
Silvia CrivelliApplied Mathematics and Computational Research Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA, 94720, USA.
Suzanne TamangProgram Evaluation and Resource Center, Office of Mental Health and Suicide Prevention, Veterans Affairs Palo Alto Health Care System, Menlo Park, CA, USA.
Susana MartinsProgram Evaluation and Resource Center, Office of Mental Health and Suicide Prevention, Veterans Affairs Palo Alto Health Care System, Menlo Park, CA, USA.
Jodie TraftonProgram Evaluation and Resource Center, Office of Mental Health and Suicide Prevention, Veterans Affairs Palo Alto Health Care System, Menlo Park, CA, USA.
David W OslinCpl Michael J Crescenz VA Medical Center, VISN 4 Mental Illness Research, Education, and Clinical Center; Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, 3535 Market Street, Philadelphia, PA, 19104, USA.
Jean C BeckhamDurham Veterans Affairs (VA) Health Care System, Durham, NC, USA.
Nathan A KimbrelDurham Veterans Affairs (VA) Health Care System, Durham, NC, USA.
Million Veteran Program Suicide Exemplar Work Group
Benjamin H McMahonLos Alamos National Laboratory, Los Alamos, NM, 87545, USA. mcmahon@lanl.gov.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
CSRD VA IK6 CX002767NCATS NIH HHS UL1 TR001863
6 · The paper itself

Abstract

We present an ensemble transfer learning method to predict suicide from Veterans Affairs (VA) electronic medical records (EMR). A diverse set of base models was trained to predict a binary outcome constructed from reported suicide, suicide attempt, and overdose diagnoses with varying choices of study design and prediction methodology. Each model used twenty cross-sectional and 190 longitudinal variables observed in eight time intervals covering 7.5 years prior to the time of prediction. Ensembles of seven base models were created and fine-tuned with ten variables expected to change with study design and outcome definition in order to predict suicide and combined outcome in a prospective cohort. The ensemble models achieved c-statistics of 0.73 on 2-year suicide risk and 0.83 on the combined outcome when predicting on a prospective cohort of [Formula: see text] 4.2 M veterans. The ensembles rely on nonlinear base models trained using a matched retrospective nested case-control (Rcc) study cohort and show good calibration across a diversity of subgroups, including risk strata, age, sex, race, and level of healthcare utilization. In addition, a linear Rcc base model provided a rich set of biological predictors, including indicators of suicide, substance use disorder, mental health diagnoses and treatments, hypoxia and vascular damage, and demographics.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsVeteransCross-Sectional StudiesHumansMachine LearningProspective StudiesRetrospective StudiesSuicide, Attempted

Identifiers

PMID38245528
PMCPMC10799879

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.