Evidence map›Paper›PMID 38243818›Full record

ArticleNeuro-oncology2024

Prognostic value of DNA methylation subclassification, aneuploidy, and CDKN2A/B homozygous deletion in predicting clinical outcome of IDH mutant astrocytomas.

Kristyn Galbraith, Mekka Garcia, Siyu Wei, Anna Chen, Chanel Schroff, Jonathan Serrano, Donato Pacione, Dimitris G Placantonakis, Christopher M William, Arline Faustin and 16 more

Abstract read
In one paragraph

Article in Neuro-oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Observational
  6. Article
  7. MYCN amplification defines an aggressive phenotype in IDH-mutant gliomas.The journal of pathology. Clinical research · 2025
    Article
  8. Central Nervous System Tumors in Adolescents and Young Adults.Current neurology and neuroscience reports · 2025
    Review
  9. Article
  10. IDH mutant high-grade gliomas.Frontiers in molecular neuroscience · 2025
    Review
  11. T2-FLAIR Mismatch Sign Predicts DNA Methylation Subclass and CDKN2A/B Status in IDH-Mutant Astrocytomas.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  12. Review
  13. Prognostic implication ofNeuro-oncology advances
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Kristyn GalbraithDepartment of Pathology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0002-5660-866X
Mekka GarciaDepartment of Neurology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Siyu WeiDepartment of Biostatistics, NYU School of Global Public Health, New York, New York, USA.
Anna ChenDepartment of Radiology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Chanel SchroffDepartment of Pathology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Jonathan SerranoDepartment of Pathology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Donato PacioneDepartment of Neurosurgery, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Dimitris G PlacantonakisDepartment of Neurosurgery, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Christopher M WilliamDepartment of Pathology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Arline FaustinDepartment of Pathology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
David ZagzagDepartment of Pathology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Marissa BarbaroDepartment of Neuro-oncology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Maria Del Pilar Guillermo Prieto EiblDepartment of Neuro-oncology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Mitsuaki ShirahataDepartment of Pathology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0001-5051-0568
David ReussDepartment of Neuropathology, Ruprecht-Karls-University, Heidelberg, Germany.ORCID 0000-0003-2269-5192
Quynh T TranDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Zahangir AlomDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Andreas von DeimlingDepartment of Neuropathology, Ruprecht-Karls-University, Heidelberg, Germany.ORCID 0000-0002-5863-540X
Brent A OrrDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID 0000-0003-0997-4728
Erik P SulmanDepartment of Radiation Oncology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
John G GolfinosDepartment of Neurosurgery, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Daniel A OrringerDepartment of Neurosurgery, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Rajan JainDepartment of Neurosurgery, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Evan LiebermanDepartment of Radiology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.
Yang FengDepartment of Biostatistics, NYU School of Global Public Health, New York, New York, USA.
Matija SnuderlDepartment of Pathology, NYU Langone Health and NYU Grossman School of Medicine, New York, New York, USA.ORCID 0000-0003-0752-0917

Funding

Clinical Translation of Stimulated Raman HistologyR01CA226527 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ORRINGER, DANIEL · 2018 to 2025
$4.4M
Developmentally Regulated Enhancers and Chromatin Architecture in Human NeurogenesisR01NS124920 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Dimitris G. Placantonakis · 2022 to 2026
$2.7M
The role of GPR133 in glioblastomaR01NS102665 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PLACANTONAKIS, DIMITRIS G. · 2018 to 2022
$2.3M
Calcium dynamics and signaling in gliomaR21NS126806 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PLACANTONAKIS, DIMITRIS G. · 2022 to 2022
$466k
Friedberg Charitable FoundationGray Family FoundationMaking Headway FoundationNational Instituions of Health grant R01-CA226527NCI NIH HHS R01 CA226527NINDS NIH HHS R01 NS102665NINDS NIH HHS R01 NS124920NINDS NIH HHS R21 NS126806
6 · The paper itself

Abstract

backgroundIsocitrate dehydrogenase (IDH) mutant astrocytoma grading, until recently, has been entirely based on morphology. The 5th edition of the Central Nervous System World Health Organization (WHO) introduces CDKN2A/B homozygous deletion as a biomarker of grade 4. We sought to investigate the prognostic impact of DNA methylation-derived molecular biomarkers for IDH mutant astrocytoma.

methodsWe analyzed 98 IDH mutant astrocytomas diagnosed at NYU Langone Health between 2014 and 2022. We reviewed DNA methylation subclass, CDKN2A/B homozygous deletion, and ploidy and correlated molecular biomarkers with histological grade, progression free (PFS), and overall (OS) survival. Findings were confirmed using 2 independent validation cohorts.

resultsThere was no significant difference in OS or PFS when stratified by histologic WHO grade alone, copy number complexity, or extent of resection. OS was significantly different when patients were stratified either by CDKN2A/B homozygous deletion or by DNA methylation subclass (P value = .0286 and .0016, respectively). None of the molecular biomarkers were associated with significantly better PFS, although DNA methylation classification showed a trend (P value = .0534).

conclusionsThe current WHO recognized grading criteria for IDH mutant astrocytomas show limited prognostic value. Stratification based on DNA methylation shows superior prognostic value for OS.

Indexed as

AstrocytomaBiomarkers, TumorBrain NeoplasmsCyclin-Dependent Kinase Inhibitor p16DNA MethylationIsocitrate DehydrogenaseMutationAdultAgedCyclin-Dependent Kinase Inhibitor p15FemaleFollow-Up StudiesGene DeletionHomozygoteHumansMaleBiomarkers, TumorCDKN2A protein, humanCDKN2B protein, humanCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16Isocitrate DehydrogenaseDNA methylationgradingIDH mutant astrocytomamolecularprognosis

Identifiers

PMID38243818
PMCPMC11145445

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.