Evidence map›Paper›PMID 38243289›Full record

ArticleVirology journal2024

An unusual diarrheal outbreak in the community in Eastern Thailand caused by Norovirus GII.3[P25].

Patpong Udompat, Krongkan Srimuang, Pawinee Doungngern, Nattakarn Thippamom, Sininat Petcharat, Khwankamon Rattanatumhi, Sirorat Khiewbanyang, Pantila Taweewigyakarn, Somkid Kripattanapong, Sasiprapa Ninwattana and 9 more

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 2 countries.

Patpong Udompat *Phrapokklao Hospital, Chanthaburi, 22000, Thailand.
Krongkan Srimuang *Thai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Rama IV Road, Pathumwan, Bangkok, 10330, Thailand.
Pawinee DoungngernDivision of Epidemiology, Department of Disease Control, Ministry of Public Health, Muang, Nonthaburi, 11000, Thailand.
Nattakarn ThippamomThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Rama IV Road, Pathumwan, Bangkok, 10330, Thailand.
Sininat PetcharatThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Rama IV Road, Pathumwan, Bangkok, 10330, Thailand.
Khwankamon RattanatumhiThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Rama IV Road, Pathumwan, Bangkok, 10330, Thailand.
Sirorat KhiewbanyangDivision of Epidemiology, Department of Disease Control, Ministry of Public Health, Muang, Nonthaburi, 11000, Thailand.
Pantila TaweewigyakarnDivision of Epidemiology, Department of Disease Control, Ministry of Public Health, Muang, Nonthaburi, 11000, Thailand.
Somkid KripattanapongDivision of Epidemiology, Department of Disease Control, Ministry of Public Health, Muang, Nonthaburi, 11000, Thailand.
Sasiprapa NinwattanaThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Rama IV Road, Pathumwan, Bangkok, 10330, Thailand.
Ananporn SupataragulThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Rama IV Road, Pathumwan, Bangkok, 10330, Thailand.
Spencer L SterlingFaculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand.
Chonticha KlungthongDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, 10400, Thailand.
Khajohn JoonlasakDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, 10400, Thailand.
Wudtichai ManasatienkijDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, 10400, Thailand.
Thomas S CotroneDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, 10400, Thailand.
Stefan FernandezDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, 10400, Thailand.
Supaporn Wacharapluesadee *Thai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Rama IV Road, Pathumwan, Bangkok, 10330, Thailand. supaporn.wac@chula.ac.th.
Opass Putcharoen *Thai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Rama IV Road, Pathumwan, Bangkok, 10330, Thailand. opassid@gmail.com.
King Chulalongkorn Memorial Hospital · THArmed Forces Research Institute of Medical Science · THDepartment of Disease Control · THChulalongkorn University · THJackson Foundation · USPrapokklao Hospital · TH

Funding

Understanding Risk of Zoonotic Virus Emergence in EID Hotspots of Southeast AsiaU01AI151797 · NIAID · ECOHEALTH ALLIANCE, INC. · PI DASZAK, PETER · 2020 to 2023
$6.0M
NIAID NIH HHS U01 AI151797
6 · The paper itself

Abstract

backgroundSentinel laboratory surveillance for diarrheal disease determined norovirus to be the most common cause of non-bacterial gastroenteritis in people during the COVID-19 pandemic in Thailand. An increase in patients presenting with diarrhea and vomiting in hospitals across Chanthaburi province between December 2021 and January 2022 led to the need for the identification of viral pathogens that may be responsible for the outbreak.

methodsFecal samples (rectal swabs or stool) from 93 patients, of which 65 patients were collected during the December 2021 to January 2022 outbreak, were collected and screened for viral infection by real-time RT-PCR. Positive samples for norovirus GII were then genotyped by targeted amplification and sequencing of partial polymerase and capsid genes. Full genome sequencing was performed from the predominant strain, GII.3[P25].

resultsNorovirus was the most common virus detected in human fecal samples in this study. 39 of 65 outbreak samples (60%) and 3 of 28 (10%) non-outbreak samples were positive for norovirus genogroup II. One was positive for rotavirus, and one indicated co-infection with rotavirus and norovirus genogroups I and II. Nucleotide sequences of VP1 and RdRp gene were successfully obtained from 28 of 39 positive norovirus GII and used for dual-typing; 25/28 (89.3%) were GII.3, and 24/28 (85.7) were GII.P25, respectively. Norovirus GII.3[P25] was the predominant strain responsible for this outbreak. The full genome sequence of norovirus GII.3[P25] from our study is the first reported in Thailand and has 98.62% and 98.57% similarity to norovirus found in China in 2021 and the USA in 2022, respectively. We further demonstrate the presence of multiple co-circulating norovirus genotypes, including GII.21[P21], GII.17[P17], GII.3[P12] and GII.4[P31] in our study.

conclusionsAn unusual diarrhea outbreak was found in December 2021 in eastern Thailand. Norovirus strain GII.3[P25] was the cause of the outbreak and was first detected in Thailand. The positive rate during GII.3[P25] outbreak was six times higher than sporadic cases (GII.4), and, atypically, adults were the primary infected population rather than children.

Indexed as

Caliciviridae InfectionsGastroenteritisNorovirusAdultChildDiarrheaDisease OutbreaksFecesGenotypeHumansPandemicsPhylogenyThailandAcute gastroenteritisDual-typingNext Generation SequencingNorovirusOutbreak

Identifiers

PMID38243289
PMCPMC10797983
OpenAlexW4391032442

What OpenQuestion holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.