Evidence map›Paper›PMID 38243141›Full record

ArticleVeterinary research communications2024

Detection of hepatitis E virus genotype 3 in an Algerian mouse (Mus spretus) in Portugal.

Sérgio Santos-Silva, Danny Franciele da Silva Dias Moraes, Pedro López-López, Joana Paupério, João Queirós, António Rivero-Juarez, Laura Lux, Rainer G Ulrich, Helena M R Gonçalves, Wim H M Van der Poel and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Veterinary research communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 6 countries.

Sérgio Santos-SilvaSchool of Medicine and Biomedical Sciences (ICBAS), University of Porto, Porto, Portugal.
Danny Franciele da Silva Dias MoraesState Department for the Environment of Mato Grosso (SEMA), Cuiabá, Brazil.
Pedro López-LópezUnit of Infectious Diseases, Clinical Virology and Zoonoses, Instituto Maimonides de Investigación Biomédica de Córdoba (IMIBIC), Hospital Universitario Reina Sofia, Universidad de Córdoba (UCO), Cordoba, Spain.
Joana PaupérioEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Welcome Genome Campus, Hinxton, CB10 1SD, UK.
João QueirósCIBIO-Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Universidade do Porto, Campus de Vairão, Vairão, 4485-661, Portugal.
António Rivero-JuarezUnit of Infectious Diseases, Clinical Virology and Zoonoses, Instituto Maimonides de Investigación Biomédica de Córdoba (IMIBIC), Hospital Universitario Reina Sofia, Universidad de Córdoba (UCO), Cordoba, Spain.
Laura LuxUniversity of Greifswald, Domstraße 11, 17489, Greifswald, Germany.
Rainer G UlrichInstitute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut (FLI), Federal Research Institute for Animal Health, Südufer 10, 17493, Greifswald-Insel Riems, Germany.
Helena M R GonçalvesREQUIMTE, Instituto Superior de Engenharia do Porto, Porto, Portugal.
Wim H M Van der PoelQuantitative Veterinary Epidemiology, Wageningen University, Wageningen, The Netherlands.
Maria S J NascimentoFaculty of Pharmacy, University of Porto (FFUP), Porto, Portugal.
João R MesquitaSchool of Medicine and Biomedical Sciences (ICBAS), University of Porto, Porto, Portugal. jrmesquita@icbas.up.pt.
Universidade do Porto · PTInstituto Maimónides de Investigación Biomédica de Córdoba · ESEuropean Bioinformatics Institute · GBFriedrich-Loeffler-Institut · DEFundação de Amparo à Pesquisa do Estado de Mato Grosso · BRRede de Química e Tecnologia · PTUniversität Greifswald · DEWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Virus monitoring in small mammals is central to the design of epidemiological control strategies for rodent-borne zoonotic viruses. Synanthropic small mammals are versatile and may be potential carriers of several microbial agents. In the present work, a total of 330 fecal samples of small mammals were collected at two sites in the North of Portugal and screened for zoonotic hepatitis E virus (HEV, species Paslahepevirus balayani). Synanthropic small mammal samples (n = 40) were collected in a city park of Porto and belonged to the species Algerian mouse (Mus spretus) (n = 26) and to the greater white-toothed shrew (Crocidura russula) (n = 14). Furthermore, additional samples were collected in the Northeast region of Portugal and included Algerian mouse (n = 48), greater white-toothed shrew (n = 47), wood mouse (Apodemus sylvaticus) (n = 43), southwestern water vole (Arvicola sapidus) (n = 52), Cabrera's vole (Microtus cabrerae) (n = 49) and Lusitanian pine vole (Microtus lusitanicus) (n = 51). A nested RT-PCR targeting a part of open reading frame (ORF) 2 region of the HEV genome was used followed by sequencing and phylogenetic analysis. HEV RNA was detected in one fecal sample (0.3%; 95% confidence interval, CI: 0.01-1.68) from a synanthropic Algerian mouse that was genotyped as HEV-3, subgenotype 3e. This is the first study reporting the detection of HEV-3 in a synanthropic rodent, the Algerian mouse. The identified HEV isolate is probably the outcome of either a spill-over infection from domestic pigs or wild boars, or the result of passive viral transit through the intestinal tract. This finding reinforces the importance in the surveillance of novel potential hosts for HEV with a particular emphasis on synanthropic animals.

Indexed as

GenotypeHepatitis EHepatitis E virusPhylogenyRodent DiseasesAnimalsFecesMicePortugalHEV reservoirOne healthRodentWildlifeZoonosis

Identifiers

PMID38243141
PMCPMC11147874
OpenAlexW4391053115

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.