Evidence map›Paper›PMID 38242941›Full record

ArticleScientific reports2024

Prediction of lung cancer using novel biomarkers based on microbiome profiling of bronchoalveolar lavage fluid.

Gihyeon Kim, Changho Park, Young Kwang Yoon, Dongil Park, Jeong Eun Lee, Dahye Lee, Pureum Sun, Shinyoung Park, Changhee Yun, Da Hyun Kang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Gihyeon Kim *Genome and Company, Pangyo-ro 255, Bundang-gu, Seongnam, Korea.
Changho Park *Genome and Company, Pangyo-ro 255, Bundang-gu, Seongnam, Korea.
Young Kwang YoonGenome and Company, Pangyo-ro 255, Bundang-gu, Seongnam, Korea.
Dongil ParkDepartment of Internal Medicine, College of Medicine, Chungnam National University, Daejeon, Korea.
Jeong Eun LeeDepartment of Internal Medicine, College of Medicine, Chungnam National University, Daejeon, Korea.
Dahye LeeInstitute for Medical Sciences, College of Medicine, Chungnam National University, Daejeon, Korea.
Pureum SunInstitute for Medical Sciences, College of Medicine, Chungnam National University, Daejeon, Korea.
Shinyoung ParkGenome and Company, Pangyo-ro 255, Bundang-gu, Seongnam, Korea.
Changhee YunGenome and Company, Pangyo-ro 255, Bundang-gu, Seongnam, Korea.
Da Hyun KangDepartment of Internal Medicine, College of Medicine, Chungnam National University, Daejeon, Korea. ibelieveu113@naver.com.
Chaeuk ChungDepartment of Internal Medicine, College of Medicine, Chungnam National University, Daejeon, Korea. universe7903@gmail.com.
Chungnam National University · KRGenome and Company (South Korea) · KR

Funding

The Basic Science Research Program of the National Research Foundation of Korea (NRF), funded by the Ministry of Science and Technology NRF-2022R1C1C1007301The Korea Health Technology R&D Project through the Korea Health Industry Development Institute (KHIDI), funded by the Ministry of Health & Welfare, Republic of Korea HR20C0025The Korea Health Technology R&D Project through the Korea Health Industry Development Institute (KHIDI), funded by the Ministry of Health & Welfare, Republic of Korea HR22C1734
6 · The paper itself

Abstract

There is an unmet need for biomarkers for the diagnosis of lung cancer and decision criteria for lung biopsy. We comparatively investigated the lung microbiomes of patients with lung cancer and benign lung diseases. Patients who underwent bronchoscopy at Chungnam National University Hospital between June 2021 and June 2022 were enrolled. Bronchoalveolar lavage fluid (BALF) was collected from 24 patients each with lung cancer and benign lung diseases. The samples were analyzed using 16S rRNA-based metagenomic sequencing. We found that alpha diversity and the beta diversity distribution (P = 0.001) differed significantly between patients with benign lung diseases and those with lung cancer. Firmicutes was the most abundant phylum in patients with lung cancer (33.39% ± 17.439), whereas Bacteroidota was the most abundant phylum in patients with benign lung disease (31.132% ± 22.505), respectively. In differential abundance analysis, the most differentially abundant microbiota taxon was unclassified_SAR202_clade, belonging to the phylum Chloroflexi. The established prediction model distinguished patients with benign lung disease from those with lung cancer with a high accuracy (micro area under the curve [AUC] = 0.98 and macro AUC = 0.99). The BALF microbiome may be a novel biomarker for the detection of lung cancer.

Indexed as

Lung DiseasesLung NeoplasmsMicrobiotaBiomarkersBronchoalveolar Lavage FluidHumansLungRNA, Ribosomal, 16SBiomarkersRNA, Ribosomal, 16S

Identifiers

PMID38242941
PMCPMC10799071
OpenAlexW4391030223

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.