Evidence map›Paper›PMID 38242876›Full record

ArticleNature communications2024

HLA class I peptide polymorphisms contribute to class II DQβ0603:DQα0103 antibody specificity.

N Remi Shih, Thoa Nong, Cathi Murphey, Mayra Lopez-Cepero, Peter W Nickerson, Jean-Luc Taupin, Magali Devriese, Jakob Nilsson, Marie-Benedicte Matignon, Robert A Bray and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

N Remi Shih *Terasaki Innovation Center, Los Angeles, CA, USA.
Thoa Nong *Terasaki Innovation Center, Los Angeles, CA, USA.
Cathi MurpheySouthwest Immunodiagnostics, Inc., San Antonio, TX, USA.
Mayra Lopez-CeperoTerasaki Innovation Center, Los Angeles, CA, USA.ORCID 0009-0002-8688-7580
Peter W NickersonMax Rady College of Medicine, University of Manitoba, Winnipeg, MB, Canada.
Jean-Luc TaupinLaboratoire d'Immunologie et Histocompatibilité and INSERM U976 IRSL, Hôpital Saint-Louis APHP, Paris, France.
Magali DevrieseLaboratoire d'Immunologie et Histocompatibilité and INSERM U976 IRSL, Hôpital Saint-Louis APHP, Paris, France.ORCID 0000-0003-1198-4677
Jakob NilssonDepartment of Immunology, University Hospital Zurich, Zurich, Switzerland.
Marie-Benedicte MatignonDepartment of Nephrology and Transplantation, Hôpital Henri Mondor APHP, Creteil, France.
Robert A BrayDepartment of Pathology, Emory University, Atlanta, GA, USA.ORCID 0000-0003-3598-5180
Jar-How LeeTerasaki Innovation Center, Los Angeles, CA, USA. jarhowlee@tictx.org.ORCID 0000-0002-2565-4276

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antibodies reactive to human leukocyte antigens (HLA) represent a barrier for patients awaiting transplantation. Based on reactivity patterns in single-antigen bead (SAB) assays, various epitope matching algorithms have been proposed to improve transplant outcomes. However, some antibody reactivities cannot be explained by amino acid motifs, leading to uncertainty about their clinical relevance. Antibodies against the HLA class II molecule, DQβ0603:DQα0103, present in some candidates, represent one such example. Here, we show that peptides derived from amino acids 119-148 of the HLA class I heavy chain are bound to DQβ0603:DQα0103 proteins and contribute to antibody reactivity through an HLA-DM-dependent process. Moreover, antibody reactivity is impacted by the specific amino acid sequence presented. In summary, we demonstrate that polymorphic HLA class I peptides, bound to HLA class II proteins, can directly or indirectly be part of the antibody binding epitope. Our findings have potential important implications for the field of transplant immunology and for our understanding of adaptive immunity.

Indexed as

Histocompatibility Antigens Class IHLA AntigensAntibodiesAntibody SpecificityEpitopesHumansPeptidesAntibodiesEpitopesHistocompatibility Antigens Class IHLA AntigensPeptides

Identifiers

PMID38242876
PMCPMC10798988

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.