Evidence map›Paper›PMID 38242633›Full record

ArticleGenes & development2024

SpoVAF and FigP assemble into oligomeric ion channels that enhance spore germination.

Yongqiang Gao, Jeremy D Amon, Anna P Brogan, Lior Artzi, Fernando H Ramírez-Guadiana, Joshua C Cofsky, Andrew C Kruse, David Z Rudner

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Early activation of bioenergetic metabolism powers bacterial spore germination.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Structural and functional analysis ofMicrobiology (Reading, England) · 2025
    Article
  5. Article
  6. Germination ofJournal of bacteriology · 2025
    Article
  7. Review
  8. Newly identified SpoVAF/FigP complex: the role inApplied and environmental microbiology · 2025
    Article
  9. Identification and characterization of theJournal of bacteriology · 2024
    Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yongqiang GaoDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Jeremy D AmonDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts 02115, USA.ORCID 0000-0002-8748-5228
Anna P BroganDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Lior ArtziDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Fernando H Ramírez-GuadianaDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Joshua C CofskyDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Andrew C KruseDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.
David Z RudnerDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts 02115, USA; rudner@hms.harvard.edu.ORCID 0000-0002-0236-7143
Harvard University · US

Funding

Molecular basis of spore germinationR01AI164647 · NIAID · HARVARD MEDICAL SCHOOL · PI Andrew Kruse, DAVID Z RUDNER · 2022 to 2026
$4.2M
Growth and differentiation in Bacillus subtilisR35GM145299 · NIGMS · HARVARD MEDICAL SCHOOL · PI DAVID Z RUDNER · 2022 to 2026
$2.9M
Identification and characterization of a comprehensive set of factors required for sporulation and germination in Bacillus anthracisR21AI171308 · NIAID · HARVARD MEDICAL SCHOOL · PI RUDNER, DAVID Z · 2022 to 2023
$466k
Molecular Mechanisms of Spore GerminationF32GM130003 · NIGMS · HARVARD MEDICAL SCHOOL · PI AMON, JEREMY DAVID · 2018 to 2021
$223k
NIAID NIH HHS R01 AI164647NIAID NIH HHS R21 AI171308NIGMS NIH HHS F32 GM130003NIGMS NIH HHS R35 GM145299
6 · The paper itself

Abstract

Bacterial spores can remain dormant for decades yet rapidly germinate and resume growth in response to nutrients. GerA family receptors that sense and respond to these signals have recently been shown to oligomerize into nutrient-gated ion channels. Ion release initiates exit from dormancy. Here, we report that a distinct ion channel, composed of SpoVAF (5AF) and its newly discovered partner protein, YqhR (FigP), amplifies the response. At high germinant concentrations, 5AF/FigP accelerate germination; at low concentrations, this complex becomes critical for exit from dormancy. 5AF is homologous to the channel-forming subunit of GerA family receptors and is predicted to oligomerize around a central pore.

Indexed as

Bacillus subtilisMembrane ProteinsBacterial ProteinsIon ChannelsSpores, BacterialBacterial ProteinsIon ChannelsMembrane ProteinsdormancyGerAgerminationion channelsignal transductionsporulation

Identifiers

PMID38242633
PMCPMC10903944
OpenAlexW4391035416

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.