Evidence map›Paper›PMID 38240857›Full record

ArticleProtoplasma2024

Omics approaches to understand the MADS-box gene family in common bean (Phaseolus vulgaris L.) against drought stress.

Aybüke Okay, Tarık Kırlıoğlu, Yasin Şamil Durdu, Sanem Şafak Akdeniz, İlker Büyük, E Sümer Aras

Abstract read
In one paragraph

Article in Protoplasma, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Frontiers in plant science · 2025
    Article
  6. Evolution and Function of MADS-Box Transcription Factors in Plants.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Aybüke OkayDepartment of Biology, Faculty of Science, Ankara University, Ankara, 06100, Turkey.ORCID http://orcid.org/0000-0002-6772-4316
Tarık KırlıoğluDepartment of Biology, Faculty of Science, Ankara University, Ankara, 06100, Turkey.ORCID http://orcid.org/0000-0003-1494-0581
Yasin Şamil DurduDepartment of Biology, Faculty of Science, Ankara University, Ankara, 06100, Turkey.ORCID http://orcid.org/0009-0000-7511-1707
Sanem Şafak AkdenizKalecik Vocational School Plant Protection Program, Ankara University, Ankara, 06100, Turkey.ORCID http://orcid.org/0000-0002-7660-9109
İlker BüyükDepartment of Biology, Faculty of Science, Ankara University, Ankara, 06100, Turkey. ilker.buyuk@gmail.com.ORCID http://orcid.org/0000-0002-0843-8299
E Sümer ArasDepartment of Biology, Faculty of Science, Ankara University, Ankara, 06100, Turkey. aras@science.ankara.edu.tr.ORCID http://orcid.org/0000-0003-3474-9493

Funding

Ankara Universitesi FHD-2022-2339
6 · The paper itself

Abstract

MADS-box genes are known to play important roles in diverse aspects of growth/devolopment and stress response in several plant species. However, no study has yet examined about MADS-box genes in P. vulgaris. In this study, a total of 79 PvMADS genes were identified and classified as type I and type II according to the phylogenetic analysis. While both type I and type II PvMADS classes were found to contain the MADS domain, the K domain was found to be present only in type II PvMADS proteins, in agreement with the literature. All chromosomes of the common bean were discovered to contain PvMADS genes and 17 paralogous gene pairs were identified. Only two of them were tandemly duplicated gene pairs (PvMADS-19/PvMADS-23 and PvMADS-20/PvMADS-24), and the remaining 15 paralogous gene pairs were segmentally duplicated genes. These duplications were found to play an important role in the expansion of type II PvMADS genes. Moreover, the RNAseq and RT-qPCR analyses showed the importance of PvMADS genes in response to drought stress in P. vulgaris.

Indexed as

DroughtsMADS Domain ProteinsPhaseolusPhylogenyGene Expression Regulation, PlantGenes, PlantMultigene FamilyPlant ProteinsStress, PhysiologicalMADS Domain ProteinsPlant ProteinsCommon beanExpression profilesMADS-boxStress responsesTranscription factor

Identifiers

PMID38240857
PMCPMC11196313

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.