Evidence map›Paper›PMID 38240316›Full record

ArticleeLife2024

Organelle proteomic profiling reveals lysosomal heterogeneity in association with longevity.

Yong Yu, Shihong M Gao, Youchen Guan, Pei-Wen Hu, Qinghao Zhang, Jiaming Liu, Bentian Jing, Qian Zhao, David M Sabatini, Monther Abu-Remaileh and 2 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Yong Yu *State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen, China.ORCID https://orcid.org/0000-0002-9821-9726
Shihong M Gao *Developmental Biology Graduate Program, Baylor College of Medicine, Houston, United States.ORCID https://orcid.org/0000-0003-3238-8348
Youchen Guan *Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States.ORCID https://orcid.org/0000-0002-6570-5293
Pei-Wen HuHuffington Center on Aging, Baylor College of Medicine, Houston, United States.
Qinghao ZhangHuffington Center on Aging, Baylor College of Medicine, Houston, United States.
Jiaming LiuState Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen, China.
Bentian JingState Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen, China.
Qian ZhaoJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States.
David M SabatiniInstitute of Organic Chemistry and Biochemistry, Prague, Czech Republic.
Monther Abu-RemailehInstitute for Chemistry, Engineering and Medicine for Human Health (ChEM-H), Stanford University, Stanford, United States.
Sung Yun JungDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, United States.
Meng C WangHuffington Center on Aging, Baylor College of Medicine, Houston, United States.ORCID https://orcid.org/0000-0002-5898-6007
Baylor College of Medicine · USHoward Hughes Medical Institute · USXiamen University · CNCzech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZPediatrics and Genetics · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

Lysosomes are active sites to integrate cellular metabolism and signal transduction. A collection of proteins associated with the lysosome mediate these metabolic and signaling functions. Both lysosomal metabolism and lysosomal signaling have been linked to longevity regulation; however, how lysosomes adjust their protein composition to accommodate this regulation remains unclear. Using deep proteomic profiling, we systemically profiled lysosome-associated proteins linked with four different longevity mechanisms. We discovered the lysosomal recruitment of AMP-activated protein kinase and nucleoporin proteins and their requirements for longevity in response to increased lysosomal lipolysis. Through comparative proteomic analyses of lysosomes from different tissues and labeled with different markers, we further elucidated lysosomal heterogeneity across tissues as well as the increased enrichment of the Ragulator complex on Cystinosin-positive lysosomes. Together, this work uncovers lysosomal proteome heterogeneity across multiple scales and provides resources for understanding the contribution of lysosomal protein dynamics to signal transduction, organelle crosstalk, and organism longevity.

Indexed as

LysosomesProteomicsIntracellular MembranesProteomeSignal TransductionProteomeagingAMPKC. eleganscell biologylongevitylysosomeorganelle interaction

Identifiers

PMID38240316
PMCPMC10876212
OpenAlexW4391025916

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.