Evidence map›Paper›PMID 38240312›Full record

ArticleeLife2024

Monoallelically expressed noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression.

Qinyu Hao, Minxue Liu, Swapna Vidhur Daulatabad, Saba Gaffari, You Jin Song, Rajneesh Srivastava, Shivang Bhaskar, Anurupa Moitra, Hazel Mangan, Elizabeth Tseng and 13 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 2 countries.

Qinyu Hao *Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, United States.ORCID https://orcid.org/0000-0002-7059-7741
Minxue Liu *Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, United States.ORCID https://orcid.org/0000-0002-7705-5822
Swapna Vidhur DaulatabadDepartment of BioHealth Informatics, School of Informatics and Computing, IUPUI, Indianapolis, United States.ORCID https://orcid.org/0000-0001-5288-8599
Saba GaffariDepartment of Computer Science, University of Illinois at Urbana-Champaign, Urbana, United States.
You Jin SongDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, United States.ORCID https://orcid.org/0000-0002-2060-3429
Rajneesh SrivastavaDepartment of BioHealth Informatics, School of Informatics and Computing, IUPUI, Indianapolis, United States.ORCID https://orcid.org/0000-0003-1093-2082
Shivang BhaskarDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, United States.
Anurupa MoitraDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, United States.
Hazel ManganCentre for Chromosome Biology, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.
Elizabeth TsengPacific Biosciences, Menlo Park, United States.
Rachel B GilmoreDepartment of Genetics and Genome Sciences, University of Connecticut School of Medicine, Farmington, United States.
Susan M FrierIonis Pharmaceuticals Inc, Carlsbad, United States.
Xin ChenDepartment of Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, United States.
Chengliang WangDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, United States.
Sui HuangDepartment of Cell and Molecular Biology, Northwestern University, Chicago, United States.
Stormy ChamberlainDepartment of Genetics and Genome Sciences, University of Connecticut School of Medicine, Farmington, United States.
Hong JinDepartment of Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, United States.
Jonas KorlachPacific Biosciences, Menlo Park, United States.
Brian McStayCentre for Chromosome Biology, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.
Saurabh SinhaDepartment of Computer Science, University of Illinois at Urbana-Champaign, Urbana, United States.
Sarath Chandra JangaDepartment of BioHealth Informatics, School of Informatics and Computing, IUPUI, Indianapolis, United States.ORCID https://orcid.org/0000-0001-7351-6268
Supriya G PrasanthDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, United States.ORCID https://orcid.org/0000-0002-3735-7498
Kannanganattu V PrasanthDepartment of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, United States.ORCID https://orcid.org/0000-0003-4587-8362
University of Illinois Urbana-Champaign · USIndiana University – Purdue University Indianapolis · USOllscoil na Gaillimhe – University of Galway · IEPacific Biosciences (United States) · USUniversity of Connecticut · USGeorgia Institute of Technology · USIonis Pharmaceuticals (United States) · US

Funding

The role of the nucleolus in human genome organization in normal and disease statesU01CA260699 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI FOLTZ, DANIEL RICHARD, HUANG, SUI · 2020 to 2024
$3.3M
Quantitative Regulatory Genomics: Networks, CIS-Regulatorycodes, and Phenotypic VariationR35GM131819 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SINHA, SAURABH · 2019 to 2023
$1.8M
Mapping RNA protein interaction networks in the human genomeR01GM123314 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI JANGA, SARATH CHANDRA · 2017 to 2021
$1.7M
Mechanisms of Translational Activation by Decapping ActivatorsR01GM120552 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI JIN, HONG · 2016 to 2020
$1.5M
Characterization of nuclear-retained RNA-mediated gene regulatory mechanismsR01GM132458 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KANNANGANATTU, PRASANTH KUMAR VIJAYAN · 2020 to 2023
$1.4M
Characterization of nuclear retained RNA-mediated gene regulatory mechanismR01GM088252 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KANNANGANATTU, PRASANTH KUMAR VIJAYAN · 2011 to 2015
$1.4M
Regulation of genomic stability by ORCR01GM125196 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI PRASANTH, SUPRIYA G · 2018 to 2021
$1.3M
Monoalleleic autosomal spreading of a novel family of nucleolus-localized ncRNAsR21AG065748 · NIA · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KANNANGANATTU, PRASANTH KUMAR VIJAYAN · 2020 to 2021
$423k
NCI NIH HHS U01 CA260699NIA NIH HHS AG065748NIA NIH HHS R21 AG065748NIA NIH HHS R21AG065748NIGMS NIH HHS GM120552NIGMS NIH HHS GM125196NIGMS NIH HHS GM132458NIGMS NIH HHS R01 GM088252NIGMS NIH HHS R01 GM120552NIGMS NIH HHS R01 GM123314NIGMS NIH HHS R01GM123314NIGMS NIH HHS R01 GM125196NIGMS NIH HHS R01 GM132458NIGMS NIH HHS R35 GM131819NIGMS NIH HHS R35GM131819
6 · The paper itself

Abstract

Out of the several hundred copies of

Indexed as

Nucleolus Organizer RegionRNA PrecursorsAnimalsCell NucleolusChromosomes, HumanHumansMammalsRNA, RibosomalRNA, UntranslatedRNA PrecursorsRNA, RibosomalRNA, Untranslatedcell lineschromosomesgene expressionhumannoncoding RNAnucleolus

Identifiers

PMID38240312
PMCPMC10852677
OpenAlexW4391034904

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.