Evidence map›Paper›PMID 38238557›Full record

ArticleNature methods2024

Content-aware frame interpolation (CAFI): deep learning-based temporal super-resolution for fast bioimaging.

Martin Priessner, David C A Gaboriau, Arlo Sheridan, Tchern Lenn, Carlos Garzon-Coral, Alexander R Dunn, Jonathan R Chubb, Aidan M Tousley, Robbie G Majzner, Uri Manor and 2 more

Abstract read
In one paragraph

Article in Nature methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Taking a closer look at matrix vesicle biogenesis.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2025
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Live-cell imaging in the deep learning era.Current opinion in cell biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Martin PriessnerDepartment of Chemistry, Imperial College London, London, UK. martin.priessner@gmail.com.ORCID http://orcid.org/0009-0005-7349-283X
David C A GaboriauFacility for Imaging by Light Microscopy, NHLI, Imperial College London, London, UK.ORCID http://orcid.org/0000-0003-4047-6487
Arlo SheridanWaitt Advanced Biophotonics Center, Salk Institute for Biological Studies, La Jolla, CA, USA.
Tchern LennCRUK City of London Centre, UCL Cancer Institute, London, UK.ORCID http://orcid.org/0000-0002-5827-4616
Carlos Garzon-CoralDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-7589-338X
Alexander R DunnDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-6096-4600
Jonathan R ChubbLaboratory for Molecular Cell Biology, University College London, London, UK.
Aidan M TousleyDepartment of Chemical Engineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-3286-0238
Robbie G MajznerDepartment of Chemical Engineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-6969-8011
Uri ManorWaitt Advanced Biophotonics Center, Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-9802-1955
Ramon VilarDepartment of Chemistry, Imperial College London, London, UK.
Romain F LaineMicrographia Bio, Translation and Innovation Hub, London, UK. r.laine@ucl.ac.uk.ORCID http://orcid.org/0000-0002-2151-4487

Funding

San Diego Nathan Shock CenterP30AG068635 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SHADEL, GERALD · 2020 to 2024
$6.0M
Molecular mechanisms underlying force transduction at cellular adhesion complexesR35GM130332 · NIGMS · STANFORD UNIVERSITY · PI Alexander R Dunn · 2019 to 2026
$4.9M
Medical Research Council MR/T027924/1NIA NIH HHS P30 AG068635NIGMS NIH HHS R35 GM130332Wellcome Trust
6 · The paper itself

Abstract

The development of high-resolution microscopes has made it possible to investigate cellular processes in 3D and over time. However, observing fast cellular dynamics remains challenging because of photobleaching and phototoxicity. Here we report the implementation of two content-aware frame interpolation (CAFI) deep learning networks, Zooming SlowMo and Depth-Aware Video Frame Interpolation, that are highly suited for accurately predicting images in between image pairs, therefore improving the temporal resolution of image series post-acquisition. We show that CAFI is capable of understanding the motion context of biological structures and can perform better than standard interpolation methods. We benchmark CAFI's performance on 12 different datasets, obtained from four different microscopy modalities, and demonstrate its capabilities for single-particle tracking and nuclear segmentation. CAFI potentially allows for reduced light exposure and phototoxicity on the sample for improved long-term live-cell imaging. The models and the training and testing data are available via the ZeroCostDL4Mic platform.

Indexed as

Deep LearningMicroscopyMotionSingle Molecule Imaging

Identifiers

PMID38238557
PMCPMC10864186

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.