ArticleProceedings of the National Academy of Sciences of the United States of America2024
Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes.
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Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17citing papers in PubMed
18.5field-weighted citation impact, top 1% of its field
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17 citing papers in PubMed, 18 citations in OpenAlex.
- Pan-species genome-wide evolution of the RGF peptide gene family and its impact on adventitious root regeneration in apple.Horticulture research · 2026Article
- A case study of evolutionary variability and determinism among type III polyketide synthases.Nature communications · 2026Article
- Genomics is modifying our concepts of evolution in homosporous and heterosporous vascular plants.American journal of botany · 2026Review
- Kingdom-wide evolutionary characterization of RNA editing factors in Archaeplastida.Molecular biology and evolution · 2026Article
- Ancient origins of alkaloid biosynthesis in medicinal clubmosses.bioRxiv : the preprint server for biology · 2026Article
- The evolution of gene expression in allopolyploid cotton relative to parental diploids and induced haploids.aBIOTECH · 2026Article
- Decoding the genome of Brainea insignis reveals insights into fern evolution and conservation.Nature communications · 2025Article
- Causes of delayed angiosperm diversification: The photosynthetic revolution, increased opportunity costs of anti-herbivore defenses, selection for qualitative toxins, and acceleration of plant-herbivore coevolution.American journal of botany · 2025Review
- Genome Architecture and Speciation in Plants and Animals.Molecular ecology · 2025Review
- Species Tree Branch Length Estimation despite Incomplete Lineage Sorting, Duplication, and Loss.Genome biology and evolution · 2025Article
- Exploring fern pathosystems and immune receptors to bridge gaps in plant immunity.BMC biology · 2025Article
- Gymnosperm-specific CYP90Js enable biflavonoid biosynthesis and microbial production of amentoflavone.Nature communications · 2025Article
- Comparative analysis using a chromosome-scale genome assembly for Funaria hygrometrica suggests greater collinearity in mosses than in seed plants.Communications biology · 2025Article
- The plant early recombinosome: a high security complex to break DNA during meiosis.Plant reproduction · 2024Review
- Patterns in Genome-Wide Codon Usage Bias in Representative Species of Lycophytes and Ferns.Genes · 2024Article
- Combined transcriptome and widely targeted metabolome analysis reveals the potential mechanism of HupA biosynthesis and antioxidant activity inFrontiers in plant science · 2024Article
- Subgenome evolutionary dynamics in allotetraploid ferns: insights from the gene expression patterns in the allotetraploid speciesFrontiers in plant science · 2023Article
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Authors and funding
25 authors at 9 institutions in 3 countries.
Cheng Li *Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.ORCID 0000-0003-4366-6139
David Wickell *Boyce Thompson Institute, Ithaca, NY 14853.
Li-Yaung KuoInstitute of Molecular and Cellular Biology, National Tsing Hua University, Hsinchu 300044, Taiwan.ORCID 0000-0002-3388-3757
Xueqing ChenShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Bao NieShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Xuezhu LiaoShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Dan PengShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Jiaojiao JiShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Jerry JenkinsGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806.
Mellissa WilliamsGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806.
Shengqiang ShuUnited States Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Christopher PlottGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806.
Kerrie BarryUnited States Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Shanmugam RajasekarArizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721.
Jane GrimwoodGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806.ORCID 0000-0002-8356-8325
Xiaoxu HanShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Shichao SunShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Zhuangwei HouShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Weijun HeShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Guanhua DaiResearch Station of Changbai Mountain Forest Ecosystems, Chinese Academy of Sciences, Yanji 133000, China.
Cheng SunCollege of Life Sciences, Capital Normal University, Beijing 100048, China.
Jeremy SchmutzGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806.ORCID 0000-0001-8062-9172
James H Leebens-MackDepartment of Plant Biology, University of Georgia, Athens, GA 30602.ORCID 0000-0003-4811-2231
Fay-Wei LiBoyce Thompson Institute, Ithaca, NY 14853.ORCID 0000-0002-0076-0152
Li WangShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China.
Agricultural Genomics Institute at Shenzhen · CNHudsonAlpha Institute for Biotechnology · USUnited States Department of Energy · USCornell University · USCapital Normal University · CNChinese Academy of Sciences · CNNational Tsing Hua University · TWUniversity of Arizona · USUniversity of Georgia · US
Funding
China Postdoctoral Science Foundation (China Postdoctoral Foundation Project) 2020M672904DOE | Idaho Operations Office, U.S. Department of Energy (DOE-ID) DE-AC02-05CH11231GDSTC | Basic and Applied Basic Research Foundation of Guangdong Province () 2020A1515110912MOST | National Key Research and Development Program of China (NKPs) 2023YFA0915802MOST | National Natural Science Foundation of China (NSFC) 32070242Science, Technology and Innovation Commission of Shenzhen Municipality () 20200811142605017
Abstract
Homosporous lycophytes (Lycopodiaceae) are a deeply diverged lineage in the plant tree of life, having split from heterosporous lycophytes (
Indexed as
Genome, PlantGenomicsEvolution, MolecularGenome SizePhylogenygene collinearitygenome evolutionhomosporous lycophytessubgenome dominancewhole genome duplication
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