Evidence map›Paper›PMID 38235208›Full record

ArticleFrontiers in plant science2023

Mr.Bean: a comprehensive statistical and visualization application for modeling agricultural field trials data.

Johan Aparicio, Salvador A Gezan, Daniel Ariza-Suarez, Bodo Raatz, Santiago Diaz, Ana Heilman-Morales, Juan Lobaton

Abstract read
In one paragraph

Article in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Johan AparicioBean Program, Crops for Nutrition and Health, Alliance Bioversity-International Center for Tropical Agriculture (CIAT), Cali, Colombia.
Salvador A GezanDeparment of Statistical Genetics, InternationalVSN, Hemel Hempstead, United Kingdom.
Daniel Ariza-SuarezBean Program, Crops for Nutrition and Health, Alliance Bioversity-International Center for Tropical Agriculture (CIAT), Cali, Colombia.
Bodo RaatzBean Program, Crops for Nutrition and Health, Alliance Bioversity-International Center for Tropical Agriculture (CIAT), Cali, Colombia.
Santiago DiazBean Program, Crops for Nutrition and Health, Alliance Bioversity-International Center for Tropical Agriculture (CIAT), Cali, Colombia.
Ana Heilman-MoralesBig Data Pipeline Unit, North Dakota State UniversityAES, Fargo, ND, United States.
Juan LobatonBean Program, Crops for Nutrition and Health, Alliance Bioversity-International Center for Tropical Agriculture (CIAT), Cali, Colombia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crop improvement efforts have exploited new methods for modeling spatial trends using the arrangement of the experimental units in the field. These methods have shown improvement in predicting the genetic potential of evaluated genotypes. However, the use of these tools may be limited by the exposure and accessibility to these products. In addition, these new methodologies often require plant scientists to be familiar with the programming environment used to implement them; constraints that limit data analysis efficiency for decision-making. These challenges have led to the development of Mr.Bean, an accessible and user-friendly tool with a comprehensive graphical visualization interface. The application integrates descriptive analysis, measures of dispersion and centralization, linear mixed model fitting, multi-environment trial analysis, factor analytic models, and genomic analysis. All these capabilities are designed to help plant breeders and scientist working with agricultural field trials make informed decisions more quickly. Mr.Bean is available for download at https://github.com/AparicioJohan/MrBeanApp.

Indexed as

breedingexperimental designsmulti-environmental analysisspatial analysistrial

Identifiers

PMID38235208
PMCPMC10792065

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.