Evidence map›Paper›PMID 38233588›Full record

ArticleNature nanotechnology2024

Carbon-nanotube field-effect transistors for resolving single-molecule aptamer-ligand binding kinetics.

Yoonhee Lee, Jakob Buchheim, Björn Hellenkamp, David Lynall, Kyungae Yang, Erik F Young, Boyan Penkov, Samuel Sia, Milan N Stojanovic, Kenneth L Shepard

Abstract read
In one paragraph

Article in Nature nanotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  13. Single-Molecule Electrical Profiling of Peptides and Proteins.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yoonhee Lee *Department of Electrical Engineering, Columbia University, New York, NY, USA.ORCID 0000-0003-0680-7668
Jakob Buchheim *Department of Electrical Engineering, Columbia University, New York, NY, USA.ORCID 0000-0002-8256-0030
Björn HellenkampDepartment of Electrical Engineering, Columbia University, New York, NY, USA.ORCID 0000-0001-7623-1452
David LynallDepartment of Electrical Engineering, Columbia University, New York, NY, USA.
Kyungae YangDepartment of Medicine, Columbia University, New York, NY, USA.ORCID 0000-0001-5575-4107
Erik F YoungQuicksilver Biosciences, Inc., New York, NY, USA.ORCID 0000-0002-7980-1251
Boyan PenkovDepartment of Electrical Engineering, Columbia University, New York, NY, USA.
Samuel SiaDepartment of Biomedical Engineering, Columbia University, New York, NY, USA.ORCID 0000-0003-0230-3542
Milan N StojanovicDepartment of Medicine, Columbia University, New York, NY, USA.
Kenneth L ShepardDepartment of Electrical Engineering, Columbia University, New York, NY, USA. shepard@ee.columbia.edu.ORCID 0000-0003-0665-6775

Funding

Enzymeless, controlled electrostatic ratcheting in solid-state nanoporesR01HG012413 · NHGRI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DRNDIC, MARIJA, SHEPARD, KENNETH L · 2022 to 2025
$3.1M
National Research Foundation of Korea (NRF) NRF2022R1A2C1092050NHGRI NIH HHS R01 HG012413United States Department of Defense | Defense Advanced Research Projects Agency (DARPA) D20AC00004
6 · The paper itself

Abstract

Small molecules such as neurotransmitters are critical for biochemical functions in living systems. While conventional ultraviolet-visible spectroscopy and mass spectrometry lack portability and are unsuitable for time-resolved measurements in situ, techniques such as amperometry and traditional field-effect detection require a large ensemble of molecules to reach detectable signal levels. Here we demonstrate the potential of carbon-nanotube-based single-molecule field-effect transistors (smFETs), which can detect the charge on a single molecule, as a new platform for recognizing and assaying small molecules. smFETs are formed by the covalent attachment of a probe molecule, in our case a DNA aptamer, to a carbon nanotube. Conformation changes on binding are manifest as discrete changes in the nanotube electrical conductance. By monitoring the kinetics of conformational changes in a binding aptamer, we show that smFETs can detect and quantify serotonin at the single-molecule level, providing unique insights into the dynamics of the aptamer-ligand system. In particular, we show the involvement of G-quadruplex formation and the disruption of the native hairpin structure in the conformational changes of the serotonin-aptamer complex. The smFET is a label-free approach to analysing molecular interactions at the single-molecule level with high temporal resolution, providing additional insights into complex biological processes.

Indexed as

Aptamers, NucleotideNanotubes, CarbonSerotoninTransistors, ElectronicBiosensing TechniquesKineticsLigandsAptamers, NucleotideLigandsNanotubes, CarbonSerotonin

Identifiers

PMID38233588
PMCPMC11229667

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.