Evidence map›Paper›PMID 38232699›Full record

ArticleCell reports. Medicine2024

Single-cell transcriptomics of the immune system in ME/CFS at baseline and following symptom provocation.

Luyen Tien Vu, Faraz Ahmed, Hongya Zhu, David Shing Huk Iu, Elizabeth A Fogarty, Yeonui Kwak, Weizhong Chen, Carl J Franconi, Paul R Munn, Ann E Tate and 9 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports. Medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 33 citations in OpenAlex.

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  16. Circulating cell-free RNA signatures for the characterization and diagnosis of myalgic encephalomyelitis/chronic fatigue syndrome.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Luyen Tien VuDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Faraz AhmedGenomics Innovation Hub and TREx Facility, Institute of Biotechnology, Cornell University, Ithaca, NY 14853, USA.
Hongya ZhuDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
David Shing Huk IuDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Elizabeth A FogartyDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Yeonui KwakDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Weizhong ChenDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Carl J FranconiDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Paul R MunnGenomics Innovation Hub and TREx Facility, Institute of Biotechnology, Cornell University, Ithaca, NY 14853, USA.
Ann E TateGenomics Innovation Hub and TREx Facility, Institute of Biotechnology, Cornell University, Ithaca, NY 14853, USA.
Susan M LevineLevine Clinic, New York, NY, USA.
Jared StevensWorkwell Foundation, Ripon, CA, USA.
Xiangling MaoDepartment of Radiology, Weill Cornell Medicine, New York, NY, USA.
Dikoma C ShunguDepartment of Radiology, Weill Cornell Medicine, New York, NY, USA.
Geoffrey E MooreDepartment of Exercise Science and Athletic Training, Ithaca College, Ithaca, NY, USA.
Betsy A KellerDepartment of Exercise Science and Athletic Training, Ithaca College, Ithaca, NY, USA.
Maureen R HansonDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Jennifer K GrenierGenomics Innovation Hub and TREx Facility, Institute of Biotechnology, Cornell University, Ithaca, NY 14853, USA. Electronic address: jgrenier@cornell.edu.
Andrew GrimsonDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA. Electronic address: agrimson@cornell.edu.
Cornell University · USIthaca College · USWeill Cornell Medicine · US

Funding

Disparities in COVID Disease Severity and Outcomes in New York CityUL1TR002384 · NCATS · WEILL MEDICAL COLL OF CORNELL UNIV · PI JULIANNE L IMPERATO-MCGINLEY · 2017 to 2026
$86.2M
Research CoreU54AI178855 · NIAID · CORNELL UNIVERSITY · PI Jennifer K Grenier · 2023 to 2026
$9.4M
Probing the Pathophysiology of ME/CFS through Proteomics and MetabolomicsU54NS105541 · NINDS · CORNELL UNIVERSITY · PI GRIMSON, ANDREW W · 2017 to 2021
$9.4M
NCATS NIH HHS UL1 TR002384NIAID NIH HHS U54 AI178855NINDS NIH HHS U54 NS105541
6 · The paper itself

Abstract

Myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) is a serious and poorly understood disease. To understand immune dysregulation in ME/CFS, we use single-cell RNA sequencing (scRNA-seq) to examine immune cells in patient and control cohorts. Postexertional malaise (PEM), an exacerbation of symptoms following strenuous exercise, is a characteristic symptom of ME/CFS. To detect changes coincident with PEM, we applied scRNA-seq on the same cohorts following exercise. At baseline, ME/CFS patients display classical monocyte dysregulation suggestive of inappropriate differentiation and migration to tissue. We identify both diseased and more normal monocytes within patients, and the fraction of diseased cells correlates with disease severity. Comparing the transcriptome at baseline and postexercise challenge, we discover patterns indicative of improper platelet activation in patients, with minimal changes elsewhere in the immune system. Taken together, these data identify immunological defects present at baseline in patients and an additional layer of dysregulation in platelets.

Indexed as

Fatigue Syndrome, ChronicExerciseGene Expression ProfilingHumansMonocytesTranscriptomeCPETexercise challengelong COVIDmonocytesmyalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS)plateletsscRNA-seq

Identifiers

PMID38232699
PMCPMC10829790
OpenAlexW4390988657

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.