Evidence map›Paper›PMID 38231044›Full record

ArticleThe Journal of cell biology2024

Mechanosensitive super-enhancers regulate genes linked to atherosclerosis in endothelial cells.

Jin Li, Jiayu Zhu, Olivia Gray, Débora R Sobreira, David Wu, Ru-Ting Huang, Bernadette Miao, Noboru J Sakabe, Matthew D Krause, Minna U Kaikkonen and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Enhancer Dynamics for Gene Regulation in the Cardiovascular System.Arteriosclerosis, thrombosis, and vascular biology · 2026
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Jin LiCommittee on Molecular Metabolism and Nutrition, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0002-9313-757X
Jiayu ZhuDepartment of Medicine, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0002-0793-6579
Olivia GrayDepartment of Human Genetics, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0002-6585-9049
Débora R SobreiraDepartment of Human Genetics, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0002-2232-3922
David WuCommittee on Molecular Metabolism and Nutrition, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0003-3162-3238
Ru-Ting HuangDepartment of Medicine, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0001-8360-9994
Bernadette MiaoDepartment of Medicine, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0002-3123-0111
Noboru J SakabeDepartment of Human Genetics, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0003-1817-6090
Matthew D KrauseDepartment of Medicine, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0009-0009-1753-6948
Minna U KaikkonenA.I.Virtanen Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland.ORCID 0000-0001-6294-0979
Casey E RomanoskiDepartment of Cellular and Molecular Medicine, University of Arizona, Tucson, AZ, USA.ORCID 0000-0002-0149-225X
Marcelo A NobregaDepartment of Human Genetics, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0002-2134-9661
Yun FangCommittee on Molecular Metabolism and Nutrition, Biological Sciences Division, The University of Chicago, Chicago, IL, USA.ORCID 0000-0003-4597-3095
University of Chicago · USUniversity of Arizona · USUniversity of Eastern Finland · FI

Funding

SOUTHWEST ENVIRONMENTAL HEALTH SCIENCES CENTERP30ES006694 · NIEHS · UNIVERSITY OF ARIZONA · PI DEAN BILLHEIMER · 1994 to 2026
$36.7M
Medical Scientist National Research Service AwardT32GM150375 · NIGMS · UNIVERSITY OF CHICAGO · PI Raghavendra G Mirmira · 2023 to 2026
$5.5M
Precision nanomedicine targeting novel endothelial mechano-sensing mechanismsR35HL161244 · NHLBI · UNIVERSITY OF CHICAGO · PI Yun Fang · 2022 to 2026
$4.0M
Coronary artery disease locus 1p32.2 and miR92a-PPAP2B signaling in endothelial mechanobiologyR01HL136765 · NHLBI · UNIVERSITY OF CHICAGO · PI FANG, YUN · 2017 to 2021
$2.0M
NHLBI NIH HHS R01 HL136765NHLBI NIH HHS R35 HL161244NIEHS NIH HHS P30 ES006694NIGMS NIH HHS T32 GM150375
6 · The paper itself

Abstract

Vascular homeostasis and pathophysiology are tightly regulated by mechanical forces generated by hemodynamics. Vascular disorders such as atherosclerotic diseases largely occur at curvatures and bifurcations where disturbed blood flow activates endothelial cells while unidirectional flow at the straight part of vessels promotes endothelial health. Integrated analysis of the endothelial transcriptome, the 3D epigenome, and human genetics systematically identified the SNP-enriched cistrome in vascular endothelium subjected to well-defined atherosclerosis-prone disturbed flow or atherosclerosis-protective unidirectional flow. Our results characterized the endothelial typical- and super-enhancers and underscored the critical regulatory role of flow-sensitive endothelial super-enhancers. CRISPR interference and activation validated the function of a previously unrecognized unidirectional flow-induced super-enhancer that upregulates antioxidant genes NQO1, CYB5B, and WWP2, and a disturbed flow-induced super-enhancer in endothelium which drives prothrombotic genes EDN1 and HIVEP in vascular endothelium. Our results employing multiomics identify the cis-regulatory architecture of the flow-sensitive endothelial epigenome related to atherosclerosis and highlight the regulatory role of super-enhancers in mechanotransduction mechanisms.

Indexed as

AtherosclerosisEndothelial CellsMechanotransduction, CellularEndothelium, VascularHumans

Identifiers

PMID38231044
PMCPMC10794123
OpenAlexW4390944373

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.