Evidence map›Paper›PMID 38230606›Full record

ArticleCardiovascular research2024

Histone demethylase KDM5 regulates cardiomyocyte maturation by promoting fatty acid oxidation, oxidative phosphorylation, and myofibrillar organization.

Manisha Deogharia, Leslye Venegas-Zamora, Akanksha Agrawal, Miusi Shi, Abhinav K Jain, Kevin J McHugh, Francisco Altamirano, Ali J Marian, Priyatansh Gurha

Open access · bronzeAbstract read
In one paragraph

Article in Cardiovascular research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 25 citations in OpenAlex.

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  12. Cardiac phenotypes in LMNA mutations.Current opinion in cardiology · 2025
    Review
  13. Phenotypic diversity of the LMNA mutations.Current opinion in cardiology · 2025
    Article
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  18. Article
  19. Fueling cardiac myocyte proliferation.The journal of cardiovascular aging · 2024
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Manisha DeoghariaCenter for Cardiovascular Genetics, Institute of Molecular Medicine, University of Texas Health Sciences Center at Houston, 6770 Bertner Street, C950G, Houston, TX 77030, USA.ORCID 0000-0002-4685-3792
Leslye Venegas-ZamoraDepartment of Cardiovascular Sciences, Houston Methodist Research Institute, 6670 Bertner Avenue, Houston, Texas 77030, USA.
Akanksha AgrawalDepartment of Cardiovascular Sciences, Houston Methodist Research Institute, 6670 Bertner Avenue, Houston, Texas 77030, USA.ORCID 0000-0003-2564-4999
Miusi ShiDepartment of Bioengineering, Rice University, 6500 Main Street, Houston, TX 77030, USA.ORCID 0000-0001-8679-4013
Abhinav K JainDepartment of Epigenetics and Molecular Carcinogenesis, Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd, Houston, TX 77030, USA.
Kevin J McHughDepartment of Bioengineering, Rice University, 6500 Main Street, Houston, TX 77030, USA.ORCID 0000-0001-6801-4431
Francisco AltamiranoDepartment of Cardiovascular Sciences, Houston Methodist Research Institute, 6670 Bertner Avenue, Houston, Texas 77030, USA.ORCID 0000-0002-1612-2729
Ali J MarianCenter for Cardiovascular Genetics, Institute of Molecular Medicine, University of Texas Health Sciences Center at Houston, 6770 Bertner Street, C950G, Houston, TX 77030, USA.
Priyatansh GurhaCenter for Cardiovascular Genetics, Institute of Molecular Medicine, University of Texas Health Sciences Center at Houston, 6770 Bertner Street, C950G, Houston, TX 77030, USA.ORCID 0000-0003-4867-7785
Houston Methodist · USThe University of Texas Health Science Center at Houston · USRice University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Pathogenic Role of Selected Cardiac Myocyte- and Fibroblast-Specific Epigenetic Changes in LaminopathiesR01HL132401 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Ali J Marian · 2016 to 2026
$6.0M
Cytosolic DNA is the Link Between Genomic Instability and Cardiovascular AgingR01AG082751 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Ali J Marian · 2023 to 2026
$2.4M
Mechanisms driving cardiac dysfunction in Autosomal Dominant Polycystic Kidney DiseaseR01HL158703 · NHLBI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI Francisco Altamirano · 2022 to 2026
$2.0M
Cell type-Specific Therapeutic Targeting of canonical WNT Pathway in Arrhythmogenic CardiomyopathyR01HL151737 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MARIAN, ALI J · 2020 to 2023
$2.0M
Role of Epigenetic Regulator KDM5A in Heart FailureR56HL165334 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI GURHA, PRIYATANSH · 2022 to 2022
$488k
NHLBI NIH HHS HL151737NHLBI NIH HHS R01 HL132401NHLBI NIH HHS R01 HL151737NHLBI NIH HHS R01 HL158703NHLBI NIH HHS R56 HL165334NIA NIH HHS AG082751NIA NIH HHS R01 AG082751
6 · The paper itself

Abstract

aimsHuman pluripotent stem cell-derived cardiomyocytes (iPSC-CMs) provide a platform to identify and characterize factors that regulate the maturation of CMs. The transition from an immature foetal to an adult CM state entails coordinated regulation of the expression of genes involved in myofibril formation and oxidative phosphorylation (OXPHOS) among others. Lysine demethylase 5 (KDM5) specifically demethylates H3K4me1/2/3 and has emerged as potential regulators of expression of genes involved in cardiac development and mitochondrial function. The purpose of this study is to determine the role of KDM5 in iPSC-CM maturation. METHODS AND

resultsKDM5A, B, and C proteins were mainly expressed in the early post-natal stages, and their expressions were progressively downregulated in the post-natal CMs and were absent in adult hearts and CMs. In contrast, KDM5 proteins were persistently expressed in the iPSC-CMs up to 60 days after the induction of myogenic differentiation, consistent with the immaturity of these cells. Inhibition of KDM5 by KDM5-C70 -a pan-KDM5 inhibitor, induced differential expression of 2372 genes, including upregulation of genes involved in fatty acid oxidation (FAO), OXPHOS, and myogenesis in the iPSC-CMs. Likewise, genome-wide profiling of H3K4me3 binding sites by the cleavage under targets and release using nuclease assay showed enriched of the H3K4me3 peaks at the promoter regions of genes encoding FAO, OXPHOS, and sarcomere proteins. Consistent with the chromatin and gene expression data, KDM5 inhibition increased the expression of multiple sarcomere proteins and enhanced myofibrillar organization. Furthermore, inhibition of KDM5 increased H3K4me3 deposits at the promoter region of the ESRRA gene and increased its RNA and protein levels. Knockdown of ESRRA in KDM5-C70-treated iPSC-CM suppressed expression of a subset of the KDM5 targets. In conjunction with changes in gene expression, KDM5 inhibition increased oxygen consumption rate and contractility in iPSC-CMs.

conclusionKDM5 inhibition enhances maturation of iPSC-CMs by epigenetically upregulating the expressions of OXPHOS, FAO, and sarcomere genes and enhancing myofibril organization and mitochondrial function.

Indexed as

Cell DifferentiationFatty AcidsMyocytes, CardiacMyofibrilsOxidative PhosphorylationRetinoblastoma-Binding Protein 2Cells, CulturedGene Expression Regulation, DevelopmentalHistonesHumansInduced Pluripotent Stem CellsMitochondria, HeartOxidation-ReductionPromoter Regions, GeneticFatty AcidsHistonesKDM5A protein, humanRetinoblastoma-Binding Protein 2EpigeneticsH3K4me3Histone modificationiPSC-cardiomyocytesKDM5

Identifiers

PMID38230606
PMCPMC11074792
OpenAlexW4390948173

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.