Evidence map›Paper›PMID 38229116›Full record

ArticleEuropean journal of medical research2024

Epigenetic characterization of sarcopenia-associated genes based on machine learning and network screening.

Yong Chen, Zhenyu Zhang, Xiaolan Hu, Yang Zhang

Abstract read
In one paragraph

Article in European journal of medical research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yong ChenKey Laboratory of Renal Diseases Occurrence and Intervention of Hubei Province, Medical College, Hubei Polytechnic University, Huangshi, 435003, China.
Zhenyu ZhangShenzhen Qihuang Guoyi Hanfang Innovation Research Center, Shenzhen, 518046, China.
Xiaolan HuHuangshi Central Hospital, Affiliated Hospital of Hubei Polytechnic University, Huangshi, 435099, China.
Yang ZhangPingshan District People's Hospital of Shenzhen, Pingshan General Hospital of Southern Medical University, No. 19 Renmin Street, Pingshan Street, Pingshan District, Shenzhen, 518118, Guangdong, China. yangzhangdr@yeah.net.ORCID http://orcid.org/0009-0004-4322-1329

Funding

Wellcome Trust 202168
6 · The paper itself

Abstract

To screen characteristic genes related to sarcopenia by bioinformatics and machine learning, and to verify the accuracy of characteristic genes in the diagnosis of sarcopenia. Download myopia-related data sets from geo public database, find the differential genes through R language limma package after merging, STRING database to build protein interaction network, and do Go analysis and GSEA analysis to understand the functions and molecular signal pathways that may be affected by the differential genes. Further screen the characteristic genes through LASSO and SVM-RFE machine algorithms, make the ROC curve of the characteristic genes, and obtain the AUC value. 10 differential genes were obtained from the data set, including 7 upregulated genes and 3 downregulated genes. Eight characteristic genes were screened by a machine learning algorithm, and the AUC value of characteristic genes exceeded 0.7. In patients with sarcopenia, the expression of TPPP3, C1QA, LGR5, MYH8, and CDKN1A genes are upregulated, and the expression of SLC38A1, SERPINA5, and HOXB2 genes are downregulated. The above genes have high accuracy in the diagnosis of sarcopenia. The research results provide new ideas for the diagnosis and mechanism research of sarcopenia.

Indexed as

SarcopeniaAlgorithmsComputational BiologyEpigenesis, GeneticHomeodomain ProteinsHumansMachine LearningTranscription FactorsHomeodomain ProteinsHOXB2 protein, humanTranscription FactorsBioinformaticsEpigeneticsMachine learningNetwork screeningSarcopenia

Identifiers

PMID38229116
PMCPMC10790491

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.