Evidence map›Paper›PMID 38228859›Full record

ArticleNature microbiology2024

Engineered probiotic overcomes pathogen defences using signal interference and antibiotic production to treat infection in mice.

Hackwon Do, Zhong-Rui Li, Praveen Kumar Tripathi, Sonali Mitra, Stephanie Guerra, Ananya Dash, Dulanthi Weerasekera, Nishanth Makthal, Syed Shams, Shifu Aggarwal and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Nature microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
19.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 35 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Formulation-dependent kinetics ofMicrobiology spectrum · 2026
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  9. Microorganisms · 2026
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  13. Journal of microbiology and biotechnology · 2025
    Article
  14. Review
  15. Review
  16. Description of the draft genome sequence ofMicrobiology resource announcements · 2025
    Article
  17. Article
  18. Postbiotics: an insightful review of the latest category in functional biotics.World journal of microbiology & biotechnology · 2025
    Review
  19. EngineeringACS sustainable chemistry & engineering · 2025
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Hackwon Do *Center for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA.
Zhong-Rui Li *Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA, USA.
Praveen Kumar Tripathi *Center for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA.
Sonali MitraCenter for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA.
Stephanie GuerraDepartment of Microbiology and Immunology, Emory School of Medicine, Atlanta, GA, USA.
Ananya DashDepartment of Microbiology and Immunology, Emory School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0001-5679-1065
Dulanthi WeerasekeraCenter for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA.
Nishanth MakthalCenter for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA.
Syed ShamsCenter for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA.
Shifu AggarwalCenter for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA.
Bharat Bhushan SinghCenter for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA.
Di GuDepartment of Chemistry, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-4860-7701
Yongle DuDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, CA, USA.
Randall J OlsenCenter for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA.
Christopher LaRockDepartment of Microbiology and Immunology, Emory School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0003-3035-5331
Wenjun ZhangDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, CA, USA. wjzhang@berkeley.edu.ORCID http://orcid.org/0000-0001-9348-972X
Muthiah KumaraswamiCenter for Molecular and Translational Human Infectious Diseases Research, Houston Methodist Research Institute, Houston, TX, USA. mkumaraswami@houstonmethodist.org.ORCID http://orcid.org/0000-0002-9959-5598
Houston Methodist · USUniversity of California, Berkeley · USEmory University · USChan Zuckerberg Initiative (United States) · USEmory Healthcare · US

Funding

In Situ Natural Product Labeling and ApplicationsDP2AT009148 · NCCIH · UNIVERSITY OF CALIFORNIA BERKELEY · PI ZHANG, WENJUN · 2015 to 2020
$2.8M
Molecular Mechanism of Virulence Regulation in Streptococcus PyogenesR01AI162748 · NIAID · METHODIST HOSPITAL RESEARCH INSTITUTE · PI KUMARASWAMI, MUTHIAH · 2021 to 2025
$2.8M
Molecular mechanism of streptococcal adaptation to host nutritional defensesR01AI146048 · NIAID · METHODIST HOSPITAL RESEARCH INSTITUTE · PI KUMARASWAMI, MUTHIAH · 2020 to 2025
$2.0M
Proteolytic regulation of the Streptococcus pyogenes cell surfaceR01AI153071 · NIAID · EMORY UNIVERSITY · PI LAROCK, CHRISTOPHER N · 2021 to 2025
$1.9M
Bioactive natural product discovery from human oral microbesR01DE032732 · NIDCR · UNIVERSITY OF CALIFORNIA BERKELEY · PI Wenjun Zhang · 2024 to 2026
$1.1M
NCCIH NIH HHS DP2 AT009148NIAID NIH HHS R01 AI146048NIAID NIH HHS R01 AI153071NIAID NIH HHS R01 AI162748
6 · The paper itself

Abstract

Probiotic supplements are suggested to promote human health by preventing pathogen colonization. However, the mechanistic bases for their efficacy in vivo are largely uncharacterized. Here using metabolomics and bacterial genetics, we show that the human oral probiotic Streptococcus salivarius K12 (SAL) produces salivabactin, an antibiotic that effectively inhibits pathogenic Streptococcus pyogenes (GAS) in vitro and in mice. However, prophylactic dosing with SAL enhanced GAS colonization in mice and ex vivo in human saliva. We showed that, on co-colonization, GAS responds to a SAL intercellular peptide signal that controls SAL salivabactin production. GAS produces a secreted protease, SpeB, that targets SAL-derived salivaricins and enhances GAS survival. Using this knowledge, we re-engineered probiotic SAL to prevent signal eavesdropping by GAS and potentiate SAL antimicrobials. This engineered probiotic demonstrated superior efficacy in preventing GAS colonization in vivo. Our findings show that knowledge of interspecies interactions can identify antibiotic- and probiotic-based strategies to combat infection.

Indexed as

ProbioticsStreptococcal InfectionsAnimalsAnti-Bacterial AgentsHumansMiceSalivaStreptococcus pyogenesAnti-Bacterial Agents

Identifiers

PMID38228859
PMCPMC10847043
OpenAlexW4390912953

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.