Evidence map›Paper›PMID 38228835›Full record

ArticleNature cancer2024

Intra-tumoral T cells in pediatric brain tumors display clonal expansion and effector properties.

Aditi Upadhye, Kevin E Meza Landeros, Ciro Ramírez-Suástegui, Benjamin J Schmiedel, Edwin Woo, Serena J Chee, Denise Malicki, Nicole G Coufal, David Gonda, Michael L Levy and 9 more

Abstract read
In one paragraph

Article in Nature cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Local delivery of interferon restores antigen presentation and sensitizes medulloblastoma to T cell killing.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. The T cell receptor landscape of childhood brain tumors.Science translational medicine · 2025
    Article
  8. Review
  9. Article
  10. Article
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  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Aditi Upadhye *La Jolla Institute for Immunology, La Jolla, CA, USA.
Kevin E Meza Landeros *La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0009-0004-4496-6824
Ciro Ramírez-SuásteguiLa Jolla Institute for Immunology, La Jolla, CA, USA.
Benjamin J SchmiedelLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-9103-9378
Edwin WooSouthampton University Hospitals NHS Trust, Southampton, UK.
Serena J CheeDepartment of Respiratory Medicine, Liverpool Heart and Chest Hospital NHS Foundation Trust, Liverpool, UK.
Denise MalickiDepartment of Pathology, University of California San Diego, La Jolla, CA, USA.
Nicole G CoufalRady Children's Hospital, San Diego, CA, USA.ORCID http://orcid.org/0000-0001-6547-1733
David GondaRady Children's Hospital, San Diego, CA, USA.
Michael L LevyRady Children's Hospital, San Diego, CA, USA.
Jason A GreenbaumLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-1381-0390
Grégory SeumoisLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-8164-6852
John CrawfordRady Children's Hospital, San Diego, CA, USA.
William D RobertsRady Children's Hospital, San Diego, CA, USA.
Stephen P SchoenbergerLa Jolla Institute for Immunology, La Jolla, CA, USA.
Hilde CheroutreLa Jolla Institute for Immunology, La Jolla, CA, USA.
Christian H OttensmeierLa Jolla Institute for Immunology, La Jolla, CA, USA.
Pandurangan VijayanandLa Jolla Institute for Immunology, La Jolla, CA, USA. vijay@lji.org.ORCID http://orcid.org/0000-0001-7067-9723
Anusha-Preethi GanesanLa Jolla Institute for Immunology, La Jolla, CA, USA. preethi@lji.org.ORCID http://orcid.org/0000-0003-3775-9996

Funding

Stimulating Neo-Antigen Specific T Cell Responses in Head and Neck CancersU01DE028227 · NIDCR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI GUTKIND, JORGE SILVIO, RAO, ANJANA · 2018 to 2022
$4.6M
Mechanisms underlying tumor-infiltrating tissue resident memory T cell generation and maintenanceK08CA230164 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GANESAN, ANUSHA PREETHI · 2019 to 2023
$1.4M
NCI NIH HHS K08 CA230164NIDCR NIH HHS U01 DE028227
6 · The paper itself

Abstract

Brain tumors in children are a devastating disease in a high proportion of patients. Owing to inconsistent results in clinical trials in unstratified patients, the role of immunotherapy remains unclear. We performed an in-depth survey of the single-cell transcriptomes and clonal relationship of intra-tumoral T cells from children with brain tumors. Our results demonstrate that a large fraction of T cells in the tumor tissue are clonally expanded with the potential to recognize tumor antigens. Such clonally expanded T cells display enrichment of transcripts linked to effector function, tissue residency, immune checkpoints and signatures of neoantigen-specific T cells and immunotherapy response. We identify neoantigens in pediatric brain tumors and show that neoantigen-specific T cell gene signatures are linked to better survival outcomes. Notably, among the patients in our cohort, we observe substantial heterogeneity in the degree of clonal expansion and magnitude of T cell response. Our findings suggest that characterization of intra-tumoral T cell responses may enable selection of patients for immunotherapy, an approach that requires prospective validation in clinical trials.

Indexed as

Brain NeoplasmsT-LymphocytesAdolescentAntigens, NeoplasmChildChild, PreschoolClone CellsFemaleHumansImmunotherapyLymphocytes, Tumor-InfiltratingMaleSingle-Cell AnalysisTranscriptomeAntigens, Neoplasm

Identifiers

PMID38228835
PMCPMC12496457

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.