Evidence map›Paper›PMID 38228813›Full record

ArticleScientific reports2024

Analysis of vitamin D receptor binding affinities of enzymatically synthesized triterpenes including ambrein and unnatural onoceroids.

Daijiro Ueda, Natsu Matsuda, Yuka Takaba, Nami Hirai, Mao Inoue, Taichi Kameya, Tohru Abe, Nao Tagaya, Yasuhiro Isogai, Yoshito Kakihara and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Daijiro UedaGraduate School of Science and Technology, Niigata University, Niigata, Japan.
Natsu MatsudaGraduate School of Science and Technology, Niigata University, Niigata, Japan.
Yuka TakabaGraduate School of Science and Technology, Niigata University, Niigata, Japan.
Nami HiraiGraduate School of Science and Technology, Niigata University, Niigata, Japan.
Mao InoueGraduate School of Science and Technology, Niigata University, Niigata, Japan.
Taichi KameyaGraduate School of Science and Technology, Niigata University, Niigata, Japan.
Tohru AbeGraduate School of Science and Technology, Niigata University, Niigata, Japan.
Nao TagayaDepartment of Pharmaceutical Engineering, Faculty of Engineering, Toyama Prefectural University, Imizu, Japan.
Yasuhiro IsogaiDepartment of Pharmaceutical Engineering, Faculty of Engineering, Toyama Prefectural University, Imizu, Japan.
Yoshito KakiharaGraduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan.
Florian BartelsInstitute of Chemistry and Biochemistry, Freie Unversität Berlin, Berlin, Germany.
Mathias ChristmannInstitute of Chemistry and Biochemistry, Freie Unversität Berlin, Berlin, Germany.
Tetsuro ShinadaGraduate School of Science, Osaka Metropolitan University, Osaka, Japan.
Kaori YasudaDepartment of Pharmaceutical Engineering, Faculty of Engineering, Toyama Prefectural University, Imizu, Japan. kyasuda@pu-toyama.ac.jp.
Tsutomu SatoGraduate School of Science and Technology, Niigata University, Niigata, Japan. satot@agr.niigata-u.ac.jp.
Niigata University · JPToyama Prefectural University · JPFreie Universität Berlin · DETokyo Metropolitan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Onoceroids are a rare family of triterpenes. One representative onoceroid is ambrein, which is the main component of ambergris used as a traditional medicine. We have previously identified the onoceroid synthase, BmeTC, in Bacillus megaterium and succeeded in creating ambrein synthase by introducing mutations into BmeTC. Owing to the structural similarity of ambrein to vitamin D, a molecule with diverse biological activities, we hypothesized that some of the activities of ambergris may be induced by the binding of ambrein to the vitamin D receptor (VDR). We demonstrated the VDR binding ability of ambrein. By comparing the structure-activity relationships of triterpenes with both the VDR affinity and osteoclastic differentiation-promoting activity, we observed that the activity of ambrein was not induced via the VDR. Therefore, some of the activities of ambergris, but not all, can be attributed to its VDR interaction. Additionally, six unnatural onoceroids were synthesized using the BmeTC reactions, and these compounds exhibited higher VDR affinity than that of ambrein. Enzymatic syntheses of onoceroid libraries will be valuable in creating a variety of bioactive compounds beyond ambergris.

Indexed as

AmbergrisTriterpenesNaphtholsReceptors, CalcitriolVitamin DAmbergrisambreinNaphtholsReceptors, CalcitriolTriterpenesVitamin D

Identifiers

PMID38228813
PMCPMC10792010
OpenAlexW4390906362

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.