Evidence map›Paper›PMID 38228683›Full record

ArticleScientific reports2024

Chemical basis of microbiome preference in the nematode C. elegans.

Victor Z Chai, Tiam Farajzadeh, Yufei Meng, Sokhna B Lo, Tymmaa A Asaed, Charles J Taylor, Elizabeth E Glater

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
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  5. Review
  6. Article
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  10. Article
  11. Selenium-EnrichedAntioxidants (Basel, Switzerland) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Victor Z Chai *Department of Neuroscience, Pomona College, Claremont, CA, USA.
Tiam Farajzadeh *Department of Chemistry, Pomona College, Claremont, CA, USA.
Yufei MengDepartment of Neuroscience, Pomona College, Claremont, CA, USA.
Sokhna B LoDepartment of Neuroscience, Pomona College, Claremont, CA, USA.
Tymmaa A AsaedDepartment of Neuroscience, Pomona College, Claremont, CA, USA.
Charles J TaylorDepartment of Chemistry, Pomona College, Claremont, CA, USA.
Elizabeth E GlaterDepartment of Neuroscience, Pomona College, Claremont, CA, USA. elizabeth.glater@pomona.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Animals are exposed to many microbes in their environment, some of which have been shown to colonize various tissues including the intestine. The composition of the intestinal microbiota affects many aspects of the host's physiology and health. Despite this, very little is known about whether host behavior contributes to the colonization. We approach this question in the nematode C. elegans, which feeds on bacteria and also harbors an intestinal microbiome. We examined the behavior of C. elegans towards CeMbio, a simplified microbiome consisting of twelve strains that represent the bacteria found in the animal's natural environment. We observed that C. elegans raised on E. coli shows a strong preference for three members of CeMbio (Lelliottia amnigena JUb66, Enterobacter hormaechei CEent1, and Pantoea nemavictus BIGb0393) compared to E. coli. Previously, these three bacterial strains have been shown to support faster C. elegans development time than E. coli OP50 and are low colonizers compared to eight other members of CeMbio. We then used gas chromatography coupled to mass spectrometry to identify that these three bacteria release isoamyl alcohol, a previously described C. elegans chemoattractant. We suggest that C. elegans seeks bacteria that release isoamyl alcohol and support faster growth.

Indexed as

Caenorhabditis elegansMicrobiotaPentanolsAnimalsBacteriaEscherichia coliGas Chromatography-Mass Spectrometryisopentyl alcoholPentanols

Identifiers

PMID38228683
PMCPMC10791660

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.