Evidence map›Paper›PMID 38228644›Full record

ArticleNature communications2024

HHV-6B detection and host gene expression implicate HHV-6B as pulmonary pathogen after hematopoietic cell transplant.

Joshua A Hill, Yeon Joo Lee, Lisa K Vande Vusse, Hu Xie, E Lisa Chung, Alpana Waghmare, Guang-Shing Cheng, Haiying Zhu, Meei-Li Huang, Geoffrey R Hill and 6 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 2 pooled it
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 2 syntheses or guidelines pooled it, 17 citations in OpenAlex.

  1. Guideline
  2. Pooled it
  3. Article
  4. Reply to Yu et al.The Journal of infectious diseases · 2025
    Article
  5. Article
  6. Article
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  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Joshua A HillDepartment of Medicine, University of Washington, 1959 NE Pacific St, Seattle, WA, 98195, USA. jahill3@fredhutch.org.ORCID 0000-0002-7665-7100
Yeon Joo LeeInfectious Diseases Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, 1275 York Ave, New York, NY, 10065, USA.
Lisa K Vande VusseDepartment of Medicine, University of Washington, 1959 NE Pacific St, Seattle, WA, 98195, USA.
Hu XieClinical Research Division, Fred Hutchinson Cancer Center, 1100 Fairview Ave N, Seattle, WA, 98109, USA.
E Lisa ChungVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, 1100 Fairview Ave N, Seattle, WA, 98109, USA.ORCID 0000-0001-6224-6549
Alpana WaghmareVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, 1100 Fairview Ave N, Seattle, WA, 98109, USA.ORCID 0000-0003-2268-9470
Guang-Shing ChengDepartment of Medicine, University of Washington, 1959 NE Pacific St, Seattle, WA, 98195, USA.
Haiying ZhuDepartment of Laboratory Medicine and Pathology, University of Washington, 1959 NE Pacific St, Seattle, WA, 98195, USA.
Meei-Li HuangDepartment of Laboratory Medicine and Pathology, University of Washington, 1959 NE Pacific St, Seattle, WA, 98195, USA.
Geoffrey R HillClinical Research Division, Fred Hutchinson Cancer Center, 1100 Fairview Ave N, Seattle, WA, 98109, USA.
Keith R JeromeVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, 1100 Fairview Ave N, Seattle, WA, 98109, USA.ORCID 0000-0002-8212-3789
Wendy M LeisenringClinical Research Division, Fred Hutchinson Cancer Center, 1100 Fairview Ave N, Seattle, WA, 98109, USA.
Danielle M ZerrVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, 1100 Fairview Ave N, Seattle, WA, 98109, USA.
Sina A GharibDepartment of Medicine, University of Washington, 1959 NE Pacific St, Seattle, WA, 98195, USA.
Sanjeet Dadwal *City of Hope National Medical Center, 1500 E Duarte Rd, Duarte, CA, 91010, USA.
Michael Boeckh *Department of Medicine, University of Washington, 1959 NE Pacific St, Seattle, WA, 98195, USA.
University of Washington · USFred Hutch Cancer Center · USSeattle Children's Hospital · USCity Of Hope National Medical Center · USMemorial Sloan Kettering Cancer Center · USSeattle Pacific University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Infections in Hematopoietic Cell Transplant RecipientsK24HL093294 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BOECKH, MICHAEL J · 2009 to 2019
$1.5M
Human Herpesvirus 6 in Lower Respiratory Tract Disease and Chromosomal Integration after Hematopoietic Cell TransplantationK23AI119133 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HILL, JOSHUA AIDEN · 2015 to 2019
$922k
American Society for Transplantation and Cellular TherapyBe The Match FoundationNational Marrow Donor ProgramNCI NIH HHS P30 CA008748NCI NIH HHS P30 CA015704NHLBI NIH HHS K24 HL093294NIAID NIH HHS K23 AI119133
6 · The paper itself

Abstract

Limited understanding of the immunopathogenesis of human herpesvirus 6B (HHV-6B) has prevented its acceptance as a pulmonary pathogen after hematopoietic cell transplant (HCT). In this prospective multicenter study of patients undergoing bronchoalveolar lavage (BAL) for pneumonia after allogeneic HCT, we test blood and BAL fluid (BALF) for HHV-6B DNA and mRNA transcripts associated with lytic infection and perform RNA-seq on paired blood. Among 116 participants, HHV-6B DNA is detected in 37% of BALs, 49% of which also have HHV-6B mRNA detection. We establish HHV-6B DNA viral load thresholds in BALF that are highly predictive of HHV-6B mRNA detection and associated with increased risk for overall mortality and death from respiratory failure. Participants with HHV-6B DNA in BALF exhibit distinct host gene expression signatures, notable for enriched interferon signaling pathways in participants clinically diagnosed with idiopathic pneumonia. These data implicate HHV-6B as a pulmonary pathogen after allogeneic HCT.

Indexed as

Hematopoietic Stem Cell TransplantationHerpesvirus 6, HumanPneumoniaRoseolovirus InfectionsDNAHumansProspective StudiesRNA, MessengerTranscriptomeDNARNA, Messenger

Identifiers

PMID38228644
PMCPMC10791683
OpenAlexW4390916184

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.