Evidence map›Paper›PMID 38227799›Full record

ArticleDatabase : the journal of biological databases and curation2024

An Inflammatory Bowel Diseases Integrated Resources Portal (IBDIRP).

Nie Kai, Cai Qingsong, Ma Kejia, Luo Weiwei, Wu Xing, Chen Xuejie, Cai Lixia, Deng Minzi, Yang Yuanyuan, Wang Xiaoyan

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Database : the journal of biological databases and curation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. The Potential of the Probiotic IsolateFood science & nutrition · 2025
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nie KaiDepartment of Gastroenterology, The Third Xiangya Hospital of Central South University, Changsha Hunan 410000, China.
Cai Qingsong
Ma KejiaDepartment of Gastroenterology, The Third Xiangya Hospital of Central South University, Changsha Hunan 410000, China.
Luo WeiweiDepartment of Gastroenterology, The Third Xiangya Hospital of Central South University, Changsha Hunan 410000, China.
Wu XingDepartment of Gastroenterology, The Third Xiangya Hospital of Central South University, Changsha Hunan 410000, China.
Chen XuejieDepartment of Gastroenterology, The Third Xiangya Hospital of Central South University, Changsha Hunan 410000, China.
Cai LixiaChangsha Hospital for Maternal and Child Health Care Affiliated to Hunan Normal University Changsha Hunan 410000, China.
Deng MinziDepartment of Gastroenterology, The Third Xiangya Hospital of Central South University, Changsha Hunan 410000, China.
Yang YuanyuanDepartment of Gastroenterology, The Third Xiangya Hospital of Central South University, Changsha Hunan 410000, China.
Wang XiaoyanDepartment of Gastroenterology, The Third Xiangya Hospital of Central South University, Changsha Hunan 410000, China.

Funding

National Natural Science Foundation of China 82300636Young Hunan Natural Science Foundation (HNSF) 2023JJ40898
6 · The paper itself

Abstract

IBD, including ulcerative colitis and Crohn's disease, is a chronic and debilitating gastrointestinal disorder that affects millions of people worldwide. Research on IBD has generated massive amounts of data, including literature, metagenomics, metabolomics, bioresources and databases. We aim to create an IBD Integrated Resources Portal (IBDIRP) that provides the most comprehensive resources for IBD. An integrated platform was developed that provides information on different aspects of IBD research resources, such as single-nucleotide polymorphisms (SNPs), genes, transcriptome, microbiota, metabolomics, single cells and other resources. Valuable and comprehensive IBD-related data were collected from PubMed, Google, GMrepo, gutMega, gutMDisorder, Single Cell Portal and other sources. Then, the data were systematically sorted, and these resources were manually curated. We systematically sorted and cataloged more than 320 unique risk SNPs associated with IBD in the SNP section. We presented over 289 IBD-related genes based on the database collection in the gene section. We also obtained 153 manually curated IBD transcriptomics data, including 12 388 samples, on the Gene Expression Omnibus database. The sorted IBD-related microbiota data from three primary microbiome databases (GMrepo, gutMega and gutMDisorder) were available for download. We selected 23 149 IBD-related taxonomic records from these databases. Additionally, we collected 24 IBD metabolomics studies with 2896 participants in the metabolomics section. We introduced two interactive single-cell data plug-in units that provided data visualization based on cells and genes. Finally, we listed 18 significant IBD web resources, such as the official European Crohn's and Colitis Organisation and International Organization for the Study of IBD websites, IBD scoring tools, IBD genetic and multi-omics resources, IBD biobanks and other useful research resources. The IBDIRP website is the first integrated resource for global IBD researchers. This portal will help researchers by providing comprehensive knowledge and enabling them to reinforce the multidimensional impression of IBD. The IBDIRP website is accessible via www.ibdirp.com Database URL: www.ibdirp.com.

Indexed as

Colitis, UlcerativeCrohn DiseaseInflammatory Bowel DiseasesMicrobiotaGene Expression ProfilingHumans

Identifiers

PMID38227799
PMCPMC10791110

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.