Evidence map›Paper›PMID 38226399›Full record

ArticleHLA2024

Complete HLA genotyping of type 1 diabetes patients and controls from Mali reveals both expected and novel disease associations.

Janelle A Noble, Stéphane Besançon, Assa Traore Sidibé, Erik H Rozemuller, Maaike Rijkers, Fereshte Dadkhodaie, Helma de Bruin, Jannetje Kooij, Harper R N Martin, Graham D Ogle and 1 more

Open access · hybridAbstract read
In one paragraph

Article in HLA, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 4 countries.

Janelle A NobleChildren's Hospital Oakland Research Institute, Oakland, California, USA.ORCID 0000-0003-0364-4795
Stéphane BesançonONG Santé Diabète, Bamako, Mali.
Assa Traore SidibéEndocrinology and Diabetes, Hopital du Mali, Bamako, Mali.
Erik H RozemullerGenDx, Utrecht, the Netherlands.
Maaike RijkersGenDx, Utrecht, the Netherlands.
Fereshte DadkhodaieGenDx, Utrecht, the Netherlands.
Helma de BruinGenDx, Utrecht, the Netherlands.
Jannetje KooijGenDx, Utrecht, the Netherlands.
Harper R N MartinChildren's Hospital Oakland Research Institute, Oakland, California, USA.
Graham D OgleLife for a Child Program, Diabetes Australia, Glebe, New South Wales, Australia.ORCID 0000-0002-2022-0866
Steven J MackDepartment of Pediatrics, University of California, San Francisco, Oakland, California, USA.ORCID 0000-0001-9820-9547
Genmab (Netherlands) · NLUniversity of California, San Francisco · USMali-Folkecenter · MLThe University of Sydney · AUUniversity of Bamako · ML

Funding

Integrated Exchange and Storage of Current- and Future-Generation Immunogenomic DataR01AI128775 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JILL Allison HOLLENBACH, STEVEN JOHN MACK · 2017 to 2026
$4.5M
NIAID NIH HHS R01 AI128775NIH HHS
6 · The paper itself

Abstract

HLA genotyping was performed on 99 type 1 diabetes (T1D) patients and 200 controls from Mali. Next-generation sequencing of the classical HLA-A, -B, -C, -DRB1, -DRB3, -DRB4, -DRB5, -DQA1, -DQB1, -DPA1, and -DPB1 loci revealed strong T1D association for all loci except HLA-C and -DPA1. Class II association is stronger than class I association, with most observed associations predisposing or protective as expected based on previous studies. For example, HLA-DRB1*03:01, HLA-DRB1*09:01, and HLA-DRB1*04:05 predispose for T1D, whereas HLA-DRB1*15:03 is protective. HLA-DPB1*04:02 (OR = 12.73, p = 2.92 × 10

Indexed as

Diabetes Mellitus, Type 1AllelesGene FrequencyGenotypeHaplotypesHLA-A AntigensHLA-B AntigensHLA-C AntigensHLA-DRB1 ChainsHumansMaliHLA-A AntigensHLA-B AntigensHLA-C AntigensHLA-DRB1 Chainsautoimmunitydisease associationKIRlinkage disequilibriumMalitype 1 diabetes

Identifiers

PMID38226399
PMCPMC10863981
OpenAlexW4390448938

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.