Evidence map›Paper›PMID 38224404›Full record

ArticleJournal of neuro-oncology2024

dCas9/CRISPR-based methylation of O-6-methylguanine-DNA methyltransferase enhances chemosensitivity to temozolomide in malignant glioma.

Serendipity Zapanta Rinonos, Tie Li, Sean Thomas Pianka, Terry J Prins, Blaine S C Eldred, Bryan M Kevan, Linda M Liau, Phioanh Leia Nghiemphu, Timothy F Cloughesy, Albert Lai

Open access · hybridAbstract read
In one paragraph

Article in Journal of neuro-oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Serendipity Zapanta Rinonos *Department of Neurosurgery, Adam Michael Rosen Neuro-Oncology Laboratories, Preston A. Wells, Jr. Center for Brain Tumor Therapy, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0001-9712-5747
Tie Li *Department of Neurology, UCLA Medical Center, Los Angeles, CA, USA.
Sean Thomas Pianka *Department of Neurology, UCLA Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-8924-5762
Terry J PrinsDepartment of Neurology, UCLA Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0003-4680-1359
Blaine S C EldredDepartment of Neurology, UCLA Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-3351-3895
Bryan M KevanDepartment of Neurology, UCLA Medical Center, Los Angeles, CA, USA.
Linda M LiauDepartment of Neurosurgery, UCLA Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-4053-0052
Phioanh Leia NghiemphuDepartment of Neurology, UCLA Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0003-4064-6079
Timothy F CloughesyDepartment of Neurology, UCLA Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-8656-7483
Albert LaiDepartment of Neurology, UCLA Medical Center, Los Angeles, CA, USA. AlbertLai@mednet.ucla.edu.ORCID http://orcid.org/0000-0002-7265-2986
UCLA Medical Center · USUniversity of Florida · US

Funding

UCLA-Caltech Medical Scientist Training ProgramT32GM008042 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AJIJOLA, OLUJIMI A, DAWSON, DAVID WAYNE · 1985 to 2023
$29.9M
UCLA SPORE in Brain CancerP50CA211015 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Yvonne Yu-Hsuan Chen · 2017 to 2026
$25.2M
TUMOR CELL SURFACES AND CHROMOSOMEST32CA009056 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gay M Crooks, David A. Nathanson · 1985 to 2026
$10.5M
Targeting m6A RNA methylation for glioma therapyF30CA247525 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PIANKA, SEAN T · 2020 to 2021
$75k
NCI NIH HHS F30 CA247525NCI NIH HHS P50 CA211015NCI NIH HHS T32 CA009056NIGMS NIH HHS T32 GM008042
6 · The paper itself

Abstract

backgroundMalignant glioma carries a poor prognosis despite current therapeutic modalities. Standard of care therapy consists of surgical resection, fractionated radiotherapy concurrently administered with temozolomide (TMZ), a DNA-alkylating chemotherapeutic agent, followed by adjuvant TMZ. O-6-methylguanine-DNA methyltransferase (MGMT), a DNA repair enzyme, removes alkylated lesions from tumor DNA, thereby promoting chemoresistance. MGMT promoter methylation status predicts responsiveness to TMZ; patients harboring unmethylated MGMT (~60% of glioblastoma) have a poorer prognosis with limited treatment benefits from TMZ.

methodsVia lentiviral-mediated delivery into LN18 glioma cells, we employed deactivated Cas9-CRISPR technology to target the MGMT promoter and enhancer regions for methylation, as mediated by the catalytic domain of the methylation enzyme DNMT3A. Methylation patterns were examined at a clonal level in regions containing Differentially Methylation Regions (DMR1, DMR2) and the Methylation Specific PCR (MSP) region used for clinical assessment of MGMT methylation status. Correlative studies of genomic and transcriptomic effects of dCas9/CRISPR-based methylation were performed via Illumina 850K methylation array platform and bulk RNA-Seq analysis.

resultsWe used the dCas9/DNMT3A catalytic domain to achieve targeted MGMT methylation at specific CpG clusters in the vicinity of promoter, enhancer, DMRs and MSP regions. Consequently, we observed MGMT downregulation and enhanced glioma chemosensitivity in survival assays in vitro, with minimal off-target effects.

conclusiondCas9/CRISPR is a viable method of epigenetic editing, using the DNMT3A catalytic domain. This study provides initial proof-of-principle for CRISPR technology applications in malignant glioma, laying groundwork for subsequent translational studies, with implications for future epigenetic editing-based clinical applications.

Indexed as

Brain NeoplasmsGliomaGuanineAntineoplastic Agents, AlkylatingDacarbazineDNADNA MethylationDNA Modification MethylasesDNA Repair EnzymesHumansO(6)-Methylguanine-DNA MethyltransferaseTemozolomideAntineoplastic Agents, AlkylatingDacarbazineDNADNA Modification MethylasesDNA Repair EnzymesGuanineO-(6)-methylguanineO(6)-Methylguanine-DNA MethyltransferaseTemozolomideChemoresistanceCRISPR therapeuticsEpigeneticsMalignant glioma/glioblastoma (GBM)MethylationMGMT

Identifiers

PMID38224404
PMCPMC10824881
OpenAlexW4390876424

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.