Evidence map›Paper›PMID 38224289›Full record

ArticleeLife2024

Leveraging inter-individual transcriptional correlation structure to infer discrete signaling mechanisms across metabolic tissues.

Mingqi Zhou, Ian Tamburini, Cassandra Van, Jeffrey Molendijk, Christy M Nguyen, Ivan Yao-Yi Chang, Casey Johnson, Leandro M Velez, Youngseo Cheon, Reichelle Yeo and 16 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  4. Article
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  8. Article
  9. Review
  10. Article
  11. Article
  12. Workshop Report-Heterogeneity and Successful Aging Part I: Heterogeneity in Aging-Challenges and Opportunities.The journals of gerontology. Series A, Biological sciences and medical sciences · 2025
    Article
  13. Article
  14. Circadian rhythms in colonic function.Frontiers in physiology · 2023
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 2 countries.

Mingqi Zhou *Department of Biological Chemistry, UC Irvine, Irvine, United States.ORCID https://orcid.org/0009-0007-7643-7873
Ian Tamburini *Department of Biological Chemistry, UC Irvine, Irvine, United States.
Cassandra Van *Center for Epigenetics and Metabolism, UC Irvine, Irvine, United States.
Jeffrey MolendijkDepartment of Anatomy and Physiology, University of Melbourne, Melbourne, Australia.ORCID https://orcid.org/0000-0001-6575-504X
Christy M NguyenDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Ivan Yao-Yi ChangDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Casey JohnsonDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Leandro M VelezDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Youngseo CheonDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Reichelle YeoTranslational Research Institute, AdventHealth, Orlando, United States.
Hosung BaeDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Johnny LeDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Natalie LarsonDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Ron PulidoDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Carlos H V Nascimento-FilhoDepartment of Biological Chemistry, UC Irvine, Irvine, United States.ORCID https://orcid.org/0000-0002-6870-2602
Cholsoon JangDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Ivan MarazziDepartment of Biological Chemistry, UC Irvine, Irvine, United States.
Jamie JusticeVeterans Administration Greater Los Angeles Healthcare System, Geriatric Research Education and Clinical Center (GRECC), Los Angeles, United States.ORCID https://orcid.org/0000-0003-2953-4404
Nicholas PannunzioDivison of Hematology/Oncology, Department of Medicine, UC Irvine Health, Irvine, United States.
Andrea L HevenerDepartment of Medicine, Division of Endocrinology, Diabetes, and Hypertension, David Geffen School of Medicine at UCLA, Los Angeles, United States.
Lauren SparksTranslational Research Institute, AdventHealth, Orlando, United States.
Erin E KershawDivision of Endocrinology, Department of Medicine, University of Pittsburg, Pittsburgh, United States.
Dequina NicholasDepartment of Biological Chemistry, UC Irvine, Irvine, United States.ORCID https://orcid.org/0000-0003-4996-2190
Benjamin L ParkerDepartment of Anatomy and Physiology, University of Melbourne, Melbourne, Australia.ORCID https://orcid.org/0000-0003-1818-2183
Selma MasriDepartment of Biological Chemistry, UC Irvine, Irvine, United States.ORCID https://orcid.org/0000-0002-8619-8331
Marcus M SeldinDepartment of Biological Chemistry, UC Irvine, Irvine, United States.ORCID https://orcid.org/0000-0001-8026-4759
University of California, Irvine · USThe University of Melbourne · AUTranslational Research Institute · AUGeriatric Research Education and Clinical Center · USPittsburg State University · USUniversity of California, Los Angeles · US

Funding

Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MILES Frome WILKINSON · 2003 to 2026
$40.4M
NIDDK Network Coordinating UnitU24DK097771 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Shuibing Chen, Jeffrey S. Grethe · 2013 to 2026
$20.9M
Sex Differences in the Metabolic SyndromeU54DK120342 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REUE, KAREN · 2018 to 2022
$7.6M
Systems Genetics Dissection of Non-alcoholic SteatohepatitisR01DK117850 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Aldons Jake Lusis · 2019 to 2026
$4.6M
Integrative approaches to dissection of endocrine communicationDP1DK130640 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI SELDIN, MARCUS MICHAEL · 2021 to 2025
$3.2M
Rapid detection of CRLF2 rearrangements in Hispanic Ph-like ALL patients to access diagnosis and relapseR37CA266042 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Nicholas Pannunzio · 2022 to 2026
$2.5M
Mechanisms controlling skeletal muscle mitochondrial function and metabolic healthR01DK109724 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HEVENER, ANDREA L · 2016 to 2020
$2.4M
Elucidating dietary fructose and alcohol interactions during liver cancer developmentR01AA029124 · NIAAA · UNIVERSITY OF CALIFORNIA-IRVINE · PI JANG, CHOLSOON · 2021 to 2025
$2.0M
Systems-based approaches for investigating tissue communication during exerciseU01AG070959 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HEVENER, ANDREA L, LUSIS, ALDONS JAKE · 2020 to 2022
$1.2M
The Role of Energy Balance in Gonadotrope and Reproductive FunctionR00HD098330 · NICHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI NICHOLAS, DEQUINA ANGELINA · 2021 to 2023
$816k
A strategy for discovery of endocrine interactionsR00HL138193 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI SELDIN, MARCUS MICHAEL · 2020 to 2022
$745k
Development of a strategy for endocrine axis discoveryK99HL138193 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SELDIN, MARCUS MICHAEL · 2018 to 2019
$268k
NCI NIH HHS R37 CA266042NHLBI NIH HHS K99 HL138193NHLBI NIH HHS R00 HL138193NIAAA NIH HHS R01 AA029124NIA NIH HHS U01 AG070959NICHD NIH HHS K99 HD098330NICHD NIH HHS R00 HD098330NIDDK NIH HHS DP1 DK130640NIDDK NIH HHS F31 DK134173NIDDK NIH HHS P30 DK063491NIDDK NIH HHS R01 DK109724NIDDK NIH HHS R01 DK117850NIDDK NIH HHS U24 DK097771NIDDK NIH HHS U54 DK120342NIH HHS AA029124NIH HHS CA266042NIH HHS DK063491NIH HHS DK097771NIH HHS DK109724NIH HHS DK120342NIH HHS DK130640NIH HHS F31DK134173-01A1NIH HHS HL138193
6 · The paper itself

Abstract

Inter-organ communication is a vital process to maintain physiologic homeostasis, and its dysregulation contributes to many human diseases. Given that circulating bioactive factors are stable in serum, occur naturally, and are easily assayed from blood, they present obvious focal molecules for therapeutic intervention and biomarker development. Recently, studies have shown that secreted proteins mediating inter-tissue signaling could be identified by 'brute force' surveys of all genes within RNA-sequencing measures across tissues within a population. Expanding on this intuition, we reasoned that parallel strategies could be used to understand how individual genes mediate signaling across metabolic tissues through correlative analyses of gene variation between individuals. Thus, comparison of quantitative levels of gene expression relationships between organs in a population could aid in understanding cross-organ signaling. Here, we surveyed gene-gene correlation structure across 18 metabolic tissues in 310 human individuals and 7 tissues in 103 diverse strains of mice fed a normal chow or high-fat/high-sucrose (HFHS) diet. Variation of genes such as

Indexed as

Proprotein Convertase 9Signal TransductionAdiposityAnimalsHomeostasisHumansMicePCSK9 protein, humanProprotein Convertase 9endocrinegeneticsgenomicshumanmouseorgan cross-talksystems genetics

Identifiers

PMID38224289
PMCPMC10945578
OpenAlexW4384028966

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.