Evidence map›Paper›PMID 38222458›Full record

ArticleMolecular vision2023

Protein modeling and in silico analysis to assess pathogenicity of

Senem Cevik, Nutsuchar Wangtiraumnuay, Kristof Van Schelvergem, Mai Tsukikawa, Jenina Capasso, Subhasis B Biswas, Barry Bodt, Alex V Levin, Esther Biswas-Fiss

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Senem CevikDepartment of Medical and Molecular Sciences, University of Delaware College of Health Sciences, Newark, DE.
Nutsuchar WangtiraumnuayDepartment of Ophthalmology, Queen Sirikit National Institute of Child Health, Bangkok, Thailand.
Kristof Van SchelvergemDepartment of Ophthalmology, Hôpitaux Iris Sud Bruxelles, Bruxelles, Belgium.
Mai TsukikawaDepartment of Ophthalmology, Duke University, Durham, NC.
Jenina CapassoDepartments of Ophthalmology and Pediatrics, Flaum Eye Institute and Golisano Children's Hospital, University of Rochester, Rochester, NY.
Subhasis B BiswasDepartment of Medical and Molecular Sciences, University of Delaware College of Health Sciences, Newark, DE.
Barry BodtCollege of Health Sciences Biostatistics Core Facility, University of Delaware, Newark, DE.
Alex V LevinDepartments of Ophthalmology and Pediatrics, Flaum Eye Institute and Golisano Children's Hospital, University of Rochester, Rochester, NY.
Esther Biswas-FissDepartment of Medical and Molecular Sciences, University of Delaware College of Health Sciences, Newark, DE.
Duke University · USQueen Sirikit National Institute of Child Health · TH

Funding

MOLECULAR ANALYSIS GENETIC MUTATIONS IN VISUAL DISEASESR15EY013113 · NEI · UNIVERSITY OF DELAWARE · PI BISWAS-FISS, ESTHER ELISSA · 2000 to 2014
$1.1M
NEI NIH HHS R15 EY013113
6 · The paper itself

Abstract

Purpose: The retina-specific ABCA transporter, ABCA4, plays an essential role in translocating retinoids required by the visual cycle. Methods: We studied 13 clinically well-defined patients with Results: We conducted a phenotype-genotype comparison of 13 genetically and phenotypically well-defined retinal disease patients. The in silico protein structure analyses we employed successfully detected the deleterious effect of missense variants found in this affected patient cohort. Our study provides American College of Medical Genetics and Genomics (ACMG)-defined supporting evidence of the pathogenicity of nine missense Conclusions: In this report, we describe a systematic approach to predicting the pathogenicity of

Indexed as

ATP-Binding Cassette TransportersRetinaHumansMutationPedigreePhenotypeStargardt DiseaseVirulenceABCA4 protein, humanATP-Binding Cassette Transporters

Identifiers

PMID38222458
PMCPMC10784225
OpenAlexW4390889623

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.