Evidence map›Paper›PMID 38222285›Full record

ArticlePhysiology and molecular biology of plants : an international journal of functional plant biology2023

Genome-wide identification, characterization, and expression analysis unveil the roles of pseudouridine synthase (PUS) family proteins in rice development and stress response.

Yashika Dhingra, Milinda Lahiri, Nikunj Bhandari, Inderjit Kaur, Shitij Gupta, Manu Agarwal, Surekha Katiyar-Agarwal

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In one paragraph

Article in Physiology and molecular biology of plants : an international journal of functional plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. The mutation of pseudouridine synthase gene BrTRUD1 resulted in glossy leaf in Chinese cabbage.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Yashika DhingraDepartment of Plant Molecular Biology, University of Delhi, South Campus, Benito Juarez Marg, Dhaula Kuan, New Delhi, 110021 India.
Milinda LahiriDepartment of Plant Molecular Biology, University of Delhi, South Campus, Benito Juarez Marg, Dhaula Kuan, New Delhi, 110021 India.
Nikunj BhandariDepartment of Plant Molecular Biology, University of Delhi, South Campus, Benito Juarez Marg, Dhaula Kuan, New Delhi, 110021 India.
Inderjit KaurDepartment of Plant Molecular Biology, University of Delhi, South Campus, Benito Juarez Marg, Dhaula Kuan, New Delhi, 110021 India.
Shitij GuptaDepartment of Plant Molecular Biology, University of Delhi, South Campus, Benito Juarez Marg, Dhaula Kuan, New Delhi, 110021 India.
Manu AgarwalDepartment of Botany, University of Delhi, North Campus, Delhi, 110007 India.
Surekha Katiyar-AgarwalDepartment of Plant Molecular Biology, University of Delhi, South Campus, Benito Juarez Marg, Dhaula Kuan, New Delhi, 110021 India.ORCID 0000-0001-8075-5654
University of Delhi · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudouridylation, the conversion of uridine (U) to pseudouridine (Ѱ), is one of the most prevalent and evolutionary conserved RNA modifications, which is catalyzed by pseudouridine synthase (PUS) enzymes. Ѱs play a crucial epitranscriptomic role by regulating attributes of cellular RNAs across diverse organisms. However, the precise biological functions of PUSs in plants remain largely elusive. In this study, we identified and characterized 21 members in the rice PUS family which were categorized into six distinct subfamilies, with RluA and TruA emerging as the most extensive. A comprehensive analysis of domain structures, motifs, and homology modeling revealed that OsPUSs possess all canonical features of true PUS proteins, essential for substrate recognition and catalysis. The exploration of Supplementary Information: The online version contains supplementary material available at 10.1007/s12298-023-01396-4.

Indexed as

Abiotic stressGene regulationPseudouridine synthasesRiceRNA modifications

Identifiers

PMID38222285
PMCPMC10784261
OpenAlexW4389164742

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.