Evidence map›Paper›PMID 38221741›Full record

ArticleThe journal of physical chemistry letters2024

Conformational Distribution of a Multidomain Protein Measured by Single-Pair Small-Angle X-ray Scattering.

Honoka Kawamukai, Shumpei Takishita, Kazumi Shimizu, Daisuke Kohda, Koichiro Ishimori, Tomohide Saio

Abstract read
In one paragraph

Article in The journal of physical chemistry letters, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Molecular principles underlying aggressive cancers.Signal transduction and targeted therapy · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Honoka KawamukaiGraduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-8628, Japan.
Shumpei TakishitaGraduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-8628, Japan.
Kazumi ShimizuFaculty of Education and Integrated Arts and Sciences, Waseda University, Tokyo 169-8050, Japan.
Daisuke KohdaDivision of Structural Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan.ORCID 0000-0001-8234-3776
Koichiro IshimoriGraduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-8628, Japan.ORCID 0000-0002-5868-0462
Tomohide SaioGraduate School of Medical Sciences, Tokushima University, Tokushima 770-8503, Japan.ORCID 0000-0003-3639-7399

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The difficulty in evaluating the conformational distribution of proteins in solution often hinders mechanistic insights. One possible strategy for visualizing conformational distribution is distance distribution measurement by single-pair small-angle X-ray scattering (SAXS), in which the scattering interference from only a specific pair of atoms in the target molecule is extracted. Despite this promising concept, with few applications in synthetic small molecules and DNA, technical difficulties have prevented its application in protein conformational studies. This study used a synthetic tag to fix the lanthanide ion at desired sites on the protein and used single-pair SAXS with contrast matching to evaluate the conformational distribution of the multidomain protein enzyme MurD. These data highlighted the broad conformational and ligand-driven distribution shifts of MurD in solution. This study proposes an important strategy in solution structural biology that targets dynamic proteins, including multidomain and intrinsically disordered proteins.

Indexed as

Intrinsically Disordered ProteinsProtein ConformationScattering, Small AngleX-Ray DiffractionX-RaysIntrinsically Disordered Proteins

Identifiers

PMID38221741
PMCPMC10823528

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.