Evidence map›Paper›PMID 38221635›Full record

ArticleInfectious diseases of poverty2024

Molecular characterization of an outbreak-involved Bacillus anthracis strain confirms the spillover of anthrax from West Africa.

Shuchao Wang, Roland Suluku, Mohamed B Jalloh, Ahmed F Samba, Baogui Jiang, Yubiao Xie, Doris Harding, Mengyao Zhang, Foday Sahr, Mahmud E Sesay and 7 more

Open access · goldAbstract read
In one paragraph

Article in Infectious diseases of poverty, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Shuchao WangChangchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, China.
Roland SulukuDepartment of Animal Sciences, School of Agriculture and Food Sciences, Njala University, Njala, Sierra Leone. rsuluku@njala.edu.sl.
Mohamed B JallohDepartment of Microbiology, College of Medicine and Allied Health Sciences, University of Sierra Leone, Freetown, Sierra Leone.
Ahmed F SambaMinistry of Agriculture and Food Sciences, Freetown, Sierra Leone.
Baogui JiangBeijing Institute of Microbiology and Epidemiology, 20 East Street, Fengtai District, Beijing, China.
Yubiao XieChangchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, China.
Doris HardingMinistry of Health and Sanitation, Freetown, Sierra Leone.
Mengyao ZhangBeijing Institute of Biotechnology, Beijing, China.
Foday SahrDepartment of Microbiology, College of Medicine and Allied Health Sciences, University of Sierra Leone, Freetown, Sierra Leone.
Mahmud E SesayDepartment of Animal Sciences, School of Agriculture and Food Sciences, Njala University, Njala, Sierra Leone.
James S SquireMinistry of Health and Sanitation, Freetown, Sierra Leone.
Mohamed A VandiMinistry of Health and Sanitation, Freetown, Sierra Leone.
Moinina N KallonDepartment of Animal Sciences, School of Agriculture and Food Sciences, Njala University, Njala, Sierra Leone.
Shoufeng ZhangChangchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, China.
Rongliang HuChangchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, China.
Yuee ZhaoBeijing Institute of Microbiology and Epidemiology, 20 East Street, Fengtai District, Beijing, China. zhaoyuee163@163.com.
Zhiqiang MiBeijing Institute of Microbiology and Epidemiology, 20 East Street, Fengtai District, Beijing, China. zhiqiangmi_ime@163.com.
Chinese Academy of Agricultural Sciences · CNMinistry of Health and Sanitation · SLNjala University · SLInstitute of Microbiology · CNUniversity of Sierra Leone · SLBeijing Fengtai Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAnthrax, a zoonotic disease caused by the spore-forming bacterium Bacillus anthracis, remains a major global public health concern, especially in countries with limited resources. Sierra Leone, a West African country historically plagued by anthrax, has almost been out of report on this disease in recent decades. In this study, we described a large-scale anthrax outbreak affecting both animals and humans and attempted to characterize the pathogen using molecular techniques.

methodsThe causative agent of the animal outbreak in Port Loko District, Sierra Leone, between March and May 2022 was identified using the nanopore sequencing technique. A nationwide active surveillance was implemented from May 2022 to June 2023 to monitor the occurrence of anthrax-specific symptoms in humans. Suspected cases were subsequently verified using quantitative polymerase chain reaction. Full-genome sequencing was accomplished by combining long-read and short-read sequencing methods. Subsequent phylogenetic analysis was performed based on the full-chromosome single nucleotide polymorphisms.

resultsThe outbreak in Port Loko District, Sierra Leone, led to the death of 233 animals between March 26th and May 16th, 2022. We ruled out the initial suspicion of Anaplasma species and successfully identified B. anthracis as the causative agent of the outbreak. As a result of the government's prompt response, out of the 49 suspected human cases identified during the one-year active surveillance, only 6 human cases tested positive, all within the first month after the official declaration of the outbreak. The phylogenetic analysis indicated that the BaSL2022 isolate responsible for the outbreak was positioned in the A.Br.153 clade within the TransEuroAsian group of B. anthracis.

conclusionsWe successfully identified a large-scale anthrax outbreak in Sierra Leone. The causative isolate of B. anthracis, BaSL2022, phylogenetically bridged other lineages in A.Br.153 clade and neighboring genetic groups, A.Br.144 and A.Br.148, eventually confirming the spillover of anthrax from West Africa. Given the wide dissemination of B. anthracis spores, it is highly advisable to effectively monitor the potential reoccurrence of anthrax outbreaks and to launch campaigns to improve public awareness regarding anthrax in Sierra Leone.

Indexed as

AnthraxBacillus anthracisAfrica, WesternAnimalsDisease OutbreaksGenome, BacterialHumansPhylogenyAnthraxBacillus anthracisMolecular identificationPhylogenySierra LeoneSingle nucleotide polymorphism

Identifiers

PMID38221635
PMCPMC10788998
OpenAlexW4390885854

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.