Evidence map›Paper›PMID 38219014›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2024

Instability of the HLA-E peptidome of HIV presents a major barrier to therapeutic targeting.

Zoë Wallace, Tiaan Heunis, Rachel L Paterson, Richard J Suckling, Tressan Grant, Marcin Dembek, Jose Donoso, Jacqui Brener, Joshua Long, Wilawan Bunjobpol and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 1 institution in 1 country.

Zoë WallaceImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK. Electronic address: zoe.wallace@immunocore.com.
Tiaan HeunisImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Rachel L PatersonImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Richard J SucklingImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Tressan GrantImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Marcin DembekImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Jose DonosoImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Jacqui BrenerImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Joshua LongImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Wilawan BunjobpolImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Dawn Gibbs-HoweImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Daniel P KayImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Darren B LeneghanImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Luis F GodinhoImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Andrew WalkerImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Praveen K SinghImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Andrew KnoxImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Sarah LeonardImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Lucy DorrellImmunocore Ltd., Abingdon, Oxfordshire OX14 4RY, UK.
Immunocore (United Kingdom) · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Naturally occurring T cells that recognize microbial peptides via HLA-E, a nonpolymorphic HLA class Ib molecule, could provide the foundation for new universal immunotherapeutics. However, confidence in the biological relevance of putative ligands is crucial, given that the mechanisms by which pathogen-derived peptides can access the HLA-E presentation pathway are poorly understood. We systematically interrogated the HIV proteome using immunopeptidomic and bioinformatic approaches, coupled with biochemical and cellular assays. No HIV HLA-E peptides were identified by tandem mass spectrometry analysis of HIV-infected cells. In addition, all bioinformatically predicted HIV peptide ligands (>80) were characterized by poor complex stability. Furthermore, infected cell elimination assays using an affinity-enhanced T cell receptor bispecific targeted to a previously reported HIV Gag HLA-E epitope demonstrated inconsistent presentation of the peptide, despite normal HLA-E expression on HIV-infected cells. This work highlights the instability of the HIV HLA-E peptidome as a major challenge for drug development.

Indexed as

HIV InfectionsHLA-E AntigensEpitopesHistocompatibility Antigens Class IHumansPeptidesEpitopesHistocompatibility Antigens Class IHLA-E AntigensPeptidesHIVHLA-EImmTAXimmunotherapeuticpeptidomeT cellTCR

Identifiers

PMID38219014
PMCPMC10928138
OpenAlexW4390810688

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.