Evidence map›Paper›PMID 38218867›Full record

ArticleScientific reports2024

ScabyNet, a user-friendly application for detecting common scab in potato tubers using deep learning and morphological traits.

Fernanda Leiva, Florent Abdelghafour, Muath Alsheikh, Nina E Nagy, Jahn Davik, Aakash Chawade

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Fernanda LeivaDepartment of Plant Breeding, Swedish University of Agricultural Sciences (SLU), P.O. Box 190, 23422, Lomma, Sweden. Fernanda.leiva@slu.se.
Florent AbdelghafourINRAE, Institut Agro, ITAP, University of Montpellier, 34196, Montpellier, France.
Muath AlsheikhGraminor Breeding Ltd., Hommelstadveien 60, 2322, Ridabu, Norway.
Nina E NagyDepartment of Fungal Plant Pathology in Forestry, Agriculture, and Horticulture, Norwegian Institute of Bioeconomy Research (NIBIO), Høgskoleveien 8, 1431, Ås, Norway.
Jahn DavikDepartment of Molecular Plant Biology, Norwegian Institute of Bioeconomy Research (NIBIO), Høgskoleveien 8, 1431, Ås, Norway.
Aakash ChawadeDepartment of Plant Breeding, Swedish University of Agricultural Sciences (SLU), P.O. Box 190, 23422, Lomma, Sweden.
Norwegian Institute of Bioeconomy Research · NOSwedish University of Agricultural Sciences · SEGraminor (Norway) · NOUniversité de Montpellier · FR

Funding

The Research Council of Norway, The research funds for agriculture and food industry 294756
6 · The paper itself

Abstract

Common scab (CS) is a major bacterial disease causing lesions on potato tubers, degrading their appearance and reducing their market value. To accurately grade scab-infected potato tubers, this study introduces "ScabyNet", an image processing approach combining color-morphology analysis with deep learning techniques. ScabyNet estimates tuber quality traits and accurately detects and quantifies CS severity levels from color images. It is presented as a standalone application with a graphical user interface comprising two main modules. One module identifies and separates tubers on images and estimates quality-related morphological features. In addition, it enables the extraction of tubers as standard tiles for the deep-learning module. The deep-learning module detects and quantifies the scab infection into five severity classes related to the relative infected area. The analysis was performed on a dataset of 7154 images of individual tiles collected from field and glasshouse experiments. Combining the two modules yields essential parameters for quality and disease inspection. The first module simplifies imaging by replacing the region proposal step of instance segmentation networks. Furthermore, the approach is an operational tool for an affordable phenotyping system that selects scab-resistant genotypes while maintaining their market standards.

Indexed as

Deep LearningSolanum tuberosumPhenotypePlant DiseasesPlant Tubers

Identifiers

PMID38218867
PMCPMC10787732
OpenAlexW4390838002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.