Evidence map›Paper›PMID 38217647›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Analysis of Phage Regulatory RNAs: Sequencing Library Construction from the Fraction of Small Prokaryotic RNAs Less Than 50 Nucleotides in Length.

Sylwia Bloch, Natalia Lewandowska, Wojciech Wesołowski, Aleksandra Łukasiak, Paulina Mach, Bożena Nejman-Faleńczyk, Grzegorz Węgrzyn

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sylwia Bloch *Department of Molecular Biology, Faculty of Biology, University of Gdansk, Gdansk, Poland.ORCID 0000-0002-3451-3619
Natalia Lewandowska *Department of Molecular Biology, Faculty of Biology, University of Gdansk, Gdansk, Poland.ORCID 0000-0002-6652-9711
Wojciech WesołowskiDepartment of Molecular Biology, Faculty of Biology, University of Gdansk, Gdansk, Poland.ORCID 0000-0003-4631-0648
Aleksandra ŁukasiakDepartment of Molecular Biology, Faculty of Biology, University of Gdansk, Gdansk, Poland.ORCID 0000-0002-5202-4261
Paulina MachDepartment of Molecular Biology, Faculty of Biology, University of Gdansk, Gdansk, Poland.
Bożena Nejman-Faleńczyk *Department of Molecular Biology, Faculty of Biology, University of Gdansk, Gdansk, Poland. bozena.nejman-falenczyk@ug.edu.pl.ORCID 0000-0003-4468-0733
Grzegorz Węgrzyn *Department of Molecular Biology, Faculty of Biology, University of Gdansk, Gdansk, Poland. grzegorz.wegrzyn@biol.ug.edu.pl.ORCID 0000-0003-4042-7466

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

So far, bacterial regulatory sRNAs of length less than 50 nucleotides have been poorly understood, and a low number of such molecules has been identified. The first microRNA-size functional ribonucleic acid occurring in a bacterial cell has been described only recently, and it was found to be encoded by a bacteriophage. One of the reasons for such a scarcity in this field is the lack of procedures intended for the isolation and selection of molecules of this size from bacterial cells. To meet these difficulties, we describe here the few-step procedure of isolation, purification, selection, and sequencing library preparation that is dedicated to the fraction of very small, bacterial RNA molecules.

Indexed as

BacteriophagesRNA, Small UntranslatedBacteriaNucleotidesProkaryotic CellsRNA, BacterialNucleotidesRNA, BacterialRNA, Small UntranslatedBacteriaBacteriophagesmicroRNA-size RNAsSequencing library

Identifiers

PMID38217647

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.