Evidence map›Paper›PMID 38217545›Full record

ArticleAging2024

XRCC1: a potential prognostic and immunological biomarker in LGG based on systematic pan-cancer analysis.

Guobing Wang, Yunyue Li, Rui Pan, Xisheng Yin, Congchao Jia, Yuchen She, Luling Huang, Guanhu Yang, Hao Chi, Gang Tian

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Guobing WangDepartment of Laboratory Medicine, The Affiliated Hospital of Southwest Medical University, Luzhou, China.
Yunyue LiQueen Mary College, Medical School of Nanchang University, Nanchang, China.
Rui PanClinical Medical College, Southwest Medical University, Luzhou, China.
Xisheng YinClinical Medical College, Southwest Medical University, Luzhou, China.
Congchao JiaClinical Medical College, Southwest Medical University, Luzhou, China.
Yuchen SheClinical Medical College, Southwest Medical University, Luzhou, China.
Luling HuangDepartment of Dermatology, Xijing Hospital, Fourth Military Medical University, Xi'an, China.
Guanhu YangDepartment of Specialty Medicine, Ohio University, Athens, OH 45701, USA.
Hao ChiClinical Medical College, Southwest Medical University, Luzhou, China.
Gang TianDepartment of Laboratory Medicine, The Affiliated Hospital of Southwest Medical University, Luzhou, China.
Southwest Medical University · CNAffiliated Hospital of Southwest Medical University · CNNanchang University · CNOhio University · USXijing Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

X-ray repair cross-complementation group 1 (XRCC1) is a pivotal contributor to base excision repair, and its dysregulation has been implicated in the oncogenicity of various human malignancies. However, a comprehensive pan-cancer analysis investigating the prognostic value, immunological functions, and epigenetic associations of XRCC1 remains lacking. To address this knowledge gap, we conducted a systematic investigation employing bioinformatics techniques across 33 cancer types. Our analysis encompassed XRCC1 expression levels, prognostic and diagnostic implications, epigenetic profiles, immune and molecular subtypes, Tumor Mutation Burden (TMB), Microsatellite Instability (MSI), immune checkpoints, and immune infiltration, leveraging data from TCGA, GTEx, CELL, Human Protein Atlas, Ualcan, and cBioPortal databases. Notably, XRCC1 displayed both positive and negative correlations with prognosis across different tumors. Epigenetic analysis revealed associations between XRCC1 expression and DNA methylation patterns in 10 cancer types, as well as enhanced phosphorylation. Furthermore, XRCC1 expression demonstrated associations with TMB and MSI in the majority of tumors. Interestingly, XRCC1 gene expression exhibited a negative correlation with immune cell infiltration levels, except for a positive correlation with M1 and M2 macrophages and monocytes in most cancers. Additionally, we observed significant correlations between XRCC1 and immune checkpoint gene expression levels. Lastly, our findings implicated XRCC1 in DNA replication and repair processes, shedding light on the precise mechanisms underlying its oncogenic effects. Overall, our study highlights the potential of XRCC1 as a prognostic and immunological pan-cancer biomarker, thereby offering a novel target for tumor immunotherapy.

Indexed as

Biomarkers, TumorNeoplasmsHumansMicrosatellite InstabilityPrognosisRadiographyX-ray Repair Cross Complementing Protein 1X-RaysBiomarkers, TumorX-ray Repair Cross Complementing Protein 1XRCC1 protein, humanimmune infiltrationpan-cancerprognosistumor microenvironmentX-ray repair cross-complementation group 1

Identifiers

PMID38217545
PMCPMC10817400
OpenAlexW4390817978

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.