Evidence map›Paper›PMID 38216606›Full record

ArticleScientific data2024

Genomic resources for a historical collection of cultivated two-row European spring barley genotypes.

Miriam Schreiber, Ronja Wonneberger, Allison M Haaning, Max Coulter, Joanne Russell, Axel Himmelbach, Anne Fiebig, Gary J Muehlbauer, Nils Stein, Robbie Waugh

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  8. Major chromosome 5H haplotype switch structures the European two-rowed spring barley germplasm of the past 190 years.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Miriam Schreiber *Division of Plant Sciences, University of Dundee at The James Hutton Institute, Invergowrie, Dundee, Scotland, DD2 5DA, UK.ORCID 0000-0002-3732-8822
Ronja Wonneberger *Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.ORCID 0000-0001-8540-1783
Allison M Haaning *Department of Agronomy and Plant Genetics, The University of Minnesota, St. Paul, MN, 55108, USA.
Max CoulterDivision of Plant Sciences, University of Dundee at The James Hutton Institute, Invergowrie, Dundee, Scotland, DD2 5DA, UK.
Joanne RussellCell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland, DD2 5DA, UK.
Axel HimmelbachLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
Anne FiebigLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.
Gary J MuehlbauerDepartment of Agronomy and Plant Genetics, The University of Minnesota, St. Paul, MN, 55108, USA.
Nils SteinLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany.ORCID 0000-0003-3011-8731
Robbie WaughDivision of Plant Sciences, University of Dundee at The James Hutton Institute, Invergowrie, Dundee, Scotland, DD2 5DA, UK. Robbie.Waugh@hutton.ac.uk.ORCID 0000-0003-1045-3065

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) MU 3589/1-1National Science Foundation (NSF) 1844331RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/S004610/1
6 · The paper itself

Abstract

Barley genomic resources are increasing rapidly, with the publication of a barley pangenome as one of the latest developments. Two-row spring barley cultivars are intensely studied as they are the source of high-quality grain for malting and distilling. Here we provide data from a European two-row spring barley population containing 209 different genotypes registered for the UK market between 1830 to 2014. The dataset encompasses RNA-sequencing data from six different tissues across a range of barley developmental stages, phenotypic datasets from two consecutive years of field-grown trials in the United Kingdom, Germany and the USA; and whole genome shotgun sequencing from all cultivars, which was used to complement the RNA-sequencing data for variant calling. The outcomes are a filtered SNP marker file, a phenotypic database and a large gene expression dataset providing a comprehensive resource which allows for downstream analyses like genome wide association studies or expression associations.

Indexed as

Genome, PlantHordeumGenome-Wide Association StudyGenomicsGenotypeRNARNA

Identifiers

PMID38216606
PMCPMC10786862

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.