Evidence map›Paper›PMID 38216563›Full record

ArticleLight, science & applications2024

Observation of a single protein by ultrafast X-ray diffraction.

Tomas Ekeberg, Dameli Assalauova, Johan Bielecki, Rebecca Boll, Benedikt J Daurer, Lutz A Eichacker, Linda E Franken, Davide E Galli, Luca Gelisio, Lars Gumprecht and 35 more

Open access · goldAbstract read
In one paragraph

Article in Light, science & applications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
17.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

45 authors at 13 institutions in 8 countries.

Tomas EkebergLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-75124, Uppsala, Sweden.
Dameli AssalauovaDeutsches Electronen-Synchrotron DESY, Notkestrasse 85, 22607, Hamburg, Germany.
Johan BieleckiEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-3012-603X
Rebecca BollEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0001-6286-4064
Benedikt J DaurerDiamond Light Source, Harwell Science & Innovation Campus, Didcot, OX11 0DE, UK.ORCID http://orcid.org/0000-0002-1887-7551
Lutz A EichackerUniversity of Stavanger, Centre Organelle Research, Richard-Johnsensgate 4, 4021, Stavanger, Norway.
Linda E FrankenLeibniz Institute for Experimental Virology (HPI), Centre for Structural Systems Biology, Notkestraße 85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0002-3040-8192
Davide E GalliDipartimento di Fisica "Aldo Pontremoli", Università degli Studi di Milano, via Celoria 16, 20133, Milano, Italy.ORCID http://orcid.org/0000-0002-1312-1181
Luca GelisioDeutsches Electronen-Synchrotron DESY, Notkestrasse 85, 22607, Hamburg, Germany.
Lars GumprechtCenter for Free-Electron Laser Science, DESY, 22607, Hamburg, Germany.
Laura H GunnLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-75124, Uppsala, Sweden.
Janos HajduLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-75124, Uppsala, Sweden.
Robert HartmannPNSensor GmbH, Otto-Hahn-Ring 6, D-81739, München, Germany.ORCID http://orcid.org/0000-0003-1839-5365
Dirk HasseLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-75124, Uppsala, Sweden.
Alexandr IgnatenkoDeutsches Electronen-Synchrotron DESY, Notkestrasse 85, 22607, Hamburg, Germany.
Jayanath KoliyaduEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-0245-3842
Olena KulykELI Beamlines/IoP Institute of Physics AS CR, v.v.i., Na Slovance 2, 182 21, Prague 8, Czech Republic.
Ruslan KurtaEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Markus KusterEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-4361-7102
Wolfgang LugmayrMulti-User CryoEM Facility, Centre for Structural Systems Biology, Notkestr.85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0001-8501-8637
Jannik LübkeCenter for Free-Electron Laser Science, DESY, 22607, Hamburg, Germany.
Adrian P MancusoEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Tommaso MazzaEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Carl NettelbladDivision of Scientific Computing, Science for Life Laboratory, Department of Information Technology, Uppsala University, Box 337, SE-75105, Uppsala, Sweden.ORCID http://orcid.org/0000-0003-0458-6902
Yevheniy OvcharenkoEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Daniel E RivasEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-7540-4902
Max RoseDeutsches Electronen-Synchrotron DESY, Notkestrasse 85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0001-5723-0884
Amit K SamantaCenter for Free-Electron Laser Science, DESY, 22607, Hamburg, Germany.
Philipp SchmidtEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0003-1980-6998
Egor SobolevEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0003-2478-5685
Nicusor TimneanuDepartment of Physics and Astronomy, Uppsala University, Box 516, SE-75120, Uppsala, Sweden.
Sergey UsenkoEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0001-5202-5267
Daniel WestphalLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-75124, Uppsala, Sweden.
Tamme WollweberThe Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761, Hamburg, Germany.
Lena WorbsCenter for Free-Electron Laser Science, DESY, 22607, Hamburg, Germany.
Paul Lourdu XavierEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0001-5132-2999
Hazem YousefEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.
Kartik AyyerThe Hamburg Center for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761, Hamburg, Germany.ORCID http://orcid.org/0000-0002-6881-564X
Henry N ChapmanCenter for Free-Electron Laser Science, DESY, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0002-4655-1743
Jonas A SellbergBiomedical and X-Ray Physics, Department of Applied Physics, AlbaNova University Center, KTH Royal Institute of Technology, SE-10691, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-2793-5052
Carolin SeuringMulti-User CryoEM Facility, Centre for Structural Systems Biology, Notkestr.85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0003-1000-0859
Ivan A VartanyantsDeutsches Electronen-Synchrotron DESY, Notkestrasse 85, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0002-0340-8234
Jochen KüpperCenter for Free-Electron Laser Science, DESY, 22607, Hamburg, Germany.ORCID http://orcid.org/0000-0003-4395-9345
Michael MeyerEuropean XFEL, Holzkoppel 4, 22869, Schenefeld, Germany.ORCID http://orcid.org/0000-0002-1444-6770
Filipe R N C MaiaLaboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3 (Box 596), SE-75124, Uppsala, Sweden. filipe.maia@icm.uu.se.
European X-Ray Free-Electron Laser · DEUniversität Hamburg · DEUppsala University · SEDeutsches Elektronen-Synchrotron DESY · DEAlbaNova · SEDiamond Light Source · GBEuropean Molecular Biology Laboratory · DEFZU ‒ Institute of Physics of the Academy of Sciences of the Czech Republic · CZLa Trobe University · AULeibniz Institute of Virology (LIV) · DEPNSensor (Germany) · DEUniversity of Milan · ITUniversity of Stavanger · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The idea of using ultrashort X-ray pulses to obtain images of single proteins frozen in time has fascinated and inspired many. It was one of the arguments for building X-ray free-electron lasers. According to theory, the extremely intense pulses provide sufficient signal to dispense with using crystals as an amplifier, and the ultrashort pulse duration permits capturing the diffraction data before the sample inevitably explodes. This was first demonstrated on biological samples a decade ago on the giant mimivirus. Since then, a large collaboration has been pushing the limit of the smallest sample that can be imaged. The ability to capture snapshots on the timescale of atomic vibrations, while keeping the sample at room temperature, may allow probing the entire conformational phase space of macromolecules. Here we show the first observation of an X-ray diffraction pattern from a single protein, that of Escherichia coli GroEL which at 14 nm in diameter is the smallest biological sample ever imaged by X-rays, and demonstrate that the concept of diffraction before destruction extends to single proteins. From the pattern, it is possible to determine the approximate orientation of the protein. Our experiment demonstrates the feasibility of ultrafast imaging of single proteins, opening the way to single-molecule time-resolved studies on the femtosecond timescale.

Identifiers

PMID38216563
PMCPMC10786860
OpenAlexW4390820421

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.