Evidence map›Paper›PMID 38214235›Full record

ArticleNucleic acids research2024

Thiolutin has complex effects in vivo but is a direct inhibitor of RNA polymerase II in vitro.

Chenxi Qiu, Payal Arora, Indranil Malik, Amber J Laperuta, Emily M Pavlovic, Scott Ugochukwu, Mandar Naik, Craig D Kaplan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  4. Article
  5. A novelFrontiers in microbiology · 2026
    Article
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  10. Review
  11. Article
  12. Article
  13. Article
  14. Biocontrol of Mycotoxigenic Fungi by Actinobacteria.Journal of fungi (Basel, Switzerland) · 2024
    Review
  15. Article
  16. Article
  17. Dithiolopyrrolones are Prochelators that are Activated by Glutathione.Chemistry (Weinheim an der Bergstrasse, Germany) · 2023
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Chenxi QiuDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Payal AroraDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Indranil MalikDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Amber J LaperutaStevenson University, Stevenson, MD 21153, USA.ORCID 0000-0002-3469-2936
Emily M PavlovicEarlham College, Richmond, IN 47374, USA.
Scott UgochukwuTexas State University, San Marcos, TX 78666, USA.
Mandar NaikDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Craig D KaplanDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.ORCID 0000-0002-7518-695X
Texas A&M University · USUniversity of Pittsburgh · USEarlham College · USStevenson University · USTexas State University · US

Funding

Mechanisms of RNA Polymerase II transcriptionR35GM144116 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Craig Kaplan · 2022 to 2026
$3.4M
Mechanism and Regulation of RNA Polymerase II ElongationR01GM097260 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAPLAN, CRAIG · 2011 to 2020
$3.3M
NIGMS NIH HHS R01 GM097260NIGMS NIH HHS R35 GM144116NIH HHS R01GM097260
6 · The paper itself

Abstract

Thiolutin is a natural product transcription inhibitor with an unresolved mode of action. Thiolutin and the related dithiolopyrrolone holomycin chelate Zn2+ and previous studies have concluded that RNA Polymerase II (Pol II) inhibition in vivo is indirect. Here, we present chemicogenetic and biochemical approaches to investigate thiolutin's mode of action in Saccharomyces cerevisiae. We identify mutants that alter sensitivity to thiolutin. We provide genetic evidence that thiolutin causes oxidation of thioredoxins in vivo and that thiolutin both induces oxidative stress and interacts functionally with multiple metals including Mn2+ and Cu2+, and not just Zn2+. Finally, we show direct inhibition of RNA polymerase II (Pol II) transcription initiation by thiolutin in vitro in support of classical studies that thiolutin can directly inhibit transcription in vitro. Inhibition requires both Mn2+ and appropriate reduction of thiolutin as excess DTT abrogates its effects. Pause prone, defective elongation can be observed in vitro if inhibition is bypassed. Thiolutin effects on Pol II occupancy in vivo are widespread but major effects are consistent with prior observations for Tor pathway inhibition and stress induction, suggesting that thiolutin use in vivo should be restricted to studies on its modes of action and not as an experimental tool.

Indexed as

PyrrolidinonesRNA Polymerase IISaccharomyces cerevisiae ProteinsSaccharomyces cerevisiaeTranscription, GeneticZincacetopyrrothinePyrrolidinonesRNA Polymerase IISaccharomyces cerevisiae ProteinsZinc

Identifiers

PMID38214235
PMCPMC10954460
OpenAlexW4390789394

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.