Evidence map›Paper›PMID 38213067›Full record

ArticlePlant biotechnology journal2024

Editing of ORF138 restores fertility of Ogura cytoplasmic male sterile broccoli via mitoTALENs.

Fengyuan Xu, Tongbing Su, Xiaochen Zhang, Lei Qiu, Xiaodong Yang, Nobuya Koizuka, Shin-Ichi Arimura, Zhongyuan Hu, Mingfang Zhang, Jinghua Yang

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Analysis ofInternational journal of molecular sciences · 2024
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Fengyuan Xu *Hainan Institute, Zhejiang University, Yazhou Bay Science and Technology City, Sanya, China.
Tongbing Su *Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.
Xiaochen ZhangHainan Institute, Zhejiang University, Yazhou Bay Science and Technology City, Sanya, China.
Lei QiuCollege of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, China.
Xiaodong YangCollege of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, China.
Nobuya KoizukaCollege of Agriculture, Tamagawa University, Tokyo, Japan.
Shin-Ichi ArimuraLaboratory of Plant Molecular Genetics, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Zhongyuan HuHainan Institute, Zhejiang University, Yazhou Bay Science and Technology City, Sanya, China.
Mingfang ZhangHainan Institute, Zhejiang University, Yazhou Bay Science and Technology City, Sanya, China.ORCID 0000-0002-9248-0712
Jinghua YangHainan Institute, Zhejiang University, Yazhou Bay Science and Technology City, Sanya, China.ORCID 0000-0003-0686-8882
Nanjing Institute of Vegetable Science · CNYangzhou University · CNBeijing Academy of Agricultural and Forestry Sciences · CNSanya University · CNTamagawa University · JPThe University of Tokyo · JP

Funding

National Natural Science Foundation of China 32030092National Natural Science Foundation of China 32172558
6 · The paper itself

Abstract

Cytoplasmic male sterility (CMS), encoded by the mitochondrial open reading frames (ORFs), has long been used to economically produce crop hybrids. However, the utilization of CMS also hinders the exploitation of sterility and fertility variation in the absence of a restorer line, which in turn narrows the genetic background and reduces biodiversity. Here, we used a mitochondrial targeted transcription activator-like effector nuclease (mitoTALENs) to knock out ORF138 from the Ogura CMS broccoli hybrid. The knockout was confirmed by the amplification and re-sequencing read mapping to the mitochondrial genome. As a result, knockout of ORF138 restored the fertility of the CMS hybrid, and simultaneously manifested a cold-sensitive male sterility. ORF138 depletion is stably inherited to the next generation, allowing for direct use in the breeding process. In addition, we proposed a highly reliable and cost-effective toolkit to accelerate the life cycle of fertile lines from CMS-derived broccoli hybrids. By applying the k-mean clustering and interaction network analysis, we identified the central gene networks involved in the fertility restoration and cold-sensitive male sterility. Our study enables mitochondrial genome editing via mitoTALENs in Brassicaceae vegetable crops and provides evidence that the sex production machinery and its temperature-responsive ability are regulated by the mitochondria.

Indexed as

BrassicaInfertility, MaleFertilityHumansMaleMitochondriaPlant BreedingPlant InfertilityTranscription Activator-Like Effector NucleasesTranscription Activator-Like Effector Nucleasesbroccolicold‐sensitive male sterilitycytoplasmic male sterilityfertility restorationmitoTALENs

Identifiers

PMID38213067
PMCPMC11022808
OpenAlexW4390793845

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.