Evidence map›Paper›PMID 38212800›Full record

ArticleBMC medical genomics2024

Interactions of genetic variations in FAS, GJB2 and PTPRN2 are associated with noise-induced hearing loss: a case-control study in China.

Shan Wu, Zhidan Wu, Manlian Chen, Xiangbin Zhong, Haoyan Gu, Wenjing Du, Weidong Liu, Li Lang, Junyi Wang

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Shan Wu *Guangdong Provincial Engineering Research Center of Public Health Detection and Assessment, School of public health, Guangdong Pharmaceutical University, Guangzhou, China.
Zhidan Wu *Guangzhou Baiyun District Center for Disease Prevention and Control, Guangzhou, China.
Manlian Chen *The Sixth people's Hospital Of Dongguan, Dongguan, China.
Xiangbin ZhongGuangdong Provincial Engineering Research Center of Public Health Detection and Assessment, School of public health, Guangdong Pharmaceutical University, Guangzhou, China.
Haoyan GuGuangdong Provincial Engineering Research Center of Public Health Detection and Assessment, School of public health, Guangdong Pharmaceutical University, Guangzhou, China.
Wenjing DuGuangdong Provincial Engineering Research Center of Public Health Detection and Assessment, School of public health, Guangdong Pharmaceutical University, Guangzhou, China.
Weidong LiuThe Sixth people's Hospital Of Dongguan, Dongguan, China.
Li LangGuangdong Province Hospital for Occupational Disease Prevention and Treatment, Guangzhou, China. langligz@126.com.
Junyi WangGuangdong Provincial Engineering Research Center of Public Health Detection and Assessment, School of public health, Guangdong Pharmaceutical University, Guangzhou, China. wjy925@163.com.
Guangdong Pharmaceutical University · CNDongguan People’s Hospital · CNGuangdong Provincial Occupational Disease Prevention Hospital · CNGuangzhou Center for Disease Control and Prevention · CN

Funding

Dongguan Science and Technology of Development key Program 202050715005209Guangdong Basic and Applied Basic Research Foundation 2019A1515110656Guangdong Medical Scientific Research Foundation A2020141Natural Science Foundation of Guangdong Province 2020A1515010582
6 · The paper itself

Abstract

backgroundThis study aimed to screen and validate noise-induced hearing loss (NIHL) associated single nucleotide polymorphisms (SNPs), construct genetic risk prediction models, and evaluate higher-order gene-gene, gene-environment interactions for NIHL in Chinese population.

methodsFirst, 83 cases and 83 controls were recruited and 60 candidate SNPs were genotyped. Then SNPs with promising results were validated in another case-control study (153 cases and 252 controls). NIHL-associated SNPs were identified by logistic regression analysis, and a genetic risk model was constructed based on the genetic risk score (GRS), and classification and regression tree (CART) analysis was used to evaluate interactions among gene-gene and gene-environment.

resultsSix SNPs in five genes were significantly associated with NIHL risk (p < 0.05). A positive dose-response relationship was found between GRS values and NIHL risk. CART analysis indicated that strongest interaction was among subjects with age ≥ 45 years and cumulative noise exposure ≥ 95 [dB(A)·years], without personal protective equipment, and carried GJB2 rs3751385 (AA/AB) and FAS rs1468063 (AA/AB) (OR = 10.038, 95% CI = 2.770, 47.792), compared with the referent group. CDH23, FAS, GJB2, PTPRN2 and SIK3 may be NIHL susceptibility genes.

conclusionGRS values may be utilized in the evaluation of the cumulative effect of genetic risk for NIHL based on NIHL-associated SNPs. Gene-gene, gene-environment interaction patterns play an important role in the incidence of NIHL.

Indexed as

Hearing Loss, Noise-InducedNoise, OccupationalCase-Control StudiesChinaConnexin 26fas ReceptorGenetic Predisposition to DiseaseGenetic Risk ScoreGenotypeHumansMiddle AgedPolymorphism, Single NucleotideReceptor-Like Protein Tyrosine Phosphatases, Class 8Connexin 26FAS protein, humanfas ReceptorGJB2 protein, humanPTPRN2 protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 8Classification and regression tree (CART)Genetic risk score (GRS)Genetic susceptibilityOccupational noise-induced hearing loss (NIHL)Single nucleotide polymorphism (SNP)

Identifiers

PMID38212800
PMCPMC10785407
OpenAlexW4390753531

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.