Evidence map›Paper›PMID 38212150›Full record

ArticleFEBS open bio2024

Machine learning-mediated identification of ferroptosis-related genes in osteonecrosis of the femoral head.

Xiaojing Huang, Hongming Meng, Zeyu Shou, Han Zhou, Liangyan Chen, Jiahuan Yu, Kai Hu, Zhibiao Bai, Chun Chen

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiaojing HuangDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, China.
Hongming MengDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, China.
Zeyu ShouDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, China.
Han ZhouDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, China.
Liangyan ChenDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, China.
Jiahuan YuDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, China.
Kai HuDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, China.
Zhibiao BaiDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, China.
Chun ChenDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, China.ORCID 0000-0002-7856-6405
Wenzhou Medical University · CN

Funding

Medical Health Science and Technology Project of Zhejiang Provincial Health Commission 2024KY144Projects of Medical and Health Technology Program in Zhejiang Province 2021KY206Zhejiang Provincial Natural Science Foundation of China LY21H060007
6 · The paper itself

Abstract

Osteonecrosis of the femoral head (ONFH) is a condition caused by a disruption or damage to the femoral head's blood supply, which causes the death of bone cells and bone marrow components and prevents future regeneration. Ferroptosis, a type of controlled cell death, is caused by iron-dependent lipid peroxidation. Here, we identified ferroptosis-related genes and infiltrating immune cells involved in ONFH and predicted the underlying molecular mechanisms. The GSE123568 dataset was subjected to differential expression analysis to identify genes related to ferroptosis. Subsequently, GO and KEGG pathway enrichment analyses, as well as protein-protein interaction (PPI) network analysis, were conducted. Hub genes involved in ferroptosis were identified using machine learning and other techniques. Additionally, immune infiltration analysis and lncRNA-miRNA-mRNA network prediction analysis were performed. Finally, we determined whether ferroptosis occurred by measuring iron content. The hub genes were validated by ROC curve analysis and qRT-PCR. Four ferroptosis-related hub genes (MAPK3, PTGS2, STK11, and SLC2A1) were identified. Additionally, immune infiltration analysis revealed a strong correlation among ONFH, hub genes, and various immune cells. Finally, we predicted the network relationship between differentially expressed lncRNAs and hub genes in the lncRNA-miRNA-mRNA network. MAPK3, PTGS2, STK11, and SLC2A1 have been identified as potential ferroptosis-related biomarkers and drug targets for the diagnosis and prognosis of ONFH, while some immune cells, as well as the interaction between lncRNA, miRNA, and mRNA, have also been identified as potential pathogenesis markers and therapeutic targets.

Indexed as

FerroptosisMicroRNAsRNA, Long NoncodingCyclooxygenase 2Femur HeadIronMachine LearningRNA, MessengerCyclooxygenase 2IronMicroRNAsRNA, Long NoncodingRNA, Messengerbioinformatics analysisferroptosisimmune infiltrationmachine learningosteonecrosis of the femoral head

Identifiers

PMID38212150
PMCPMC10909969
OpenAlexW4390765915

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.