Evidence map›Paper›PMID 38206904›Full record

ArticlePLoS biology2024

Retinoic acid signaling regulates spatiotemporal specification of human green and red cones.

Sarah E Hadyniak, Joanna F D Hagen, Kiara C Eldred, Boris Brenerman, Katarzyna A Hussey, Rajiv C McCoy, Michael E G Sauria, James A Kuchenbecker, Thomas Reh, Ian Glass and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Retinoic acid in health and disease.Signal transduction and targeted therapy · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. The hourglass of high acuity vision: Cone plasticity at the intersection of time and space shapes the foveola.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. A cell fate specification and transition mechanism for human foveolar cone subtype patterning.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Sarah E HadyniakDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States.
Joanna F D HagenDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States.
Kiara C EldredDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States.
Boris BrenermanDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States.
Katarzyna A HusseyDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States.
Rajiv C McCoyDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States.
Michael E G SauriaDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States.
James A KuchenbeckerDepartment of Ophthalmology, University of Washington, Seattle, Washington State, United States.
Thomas RehDepartment of Biological Structure, University of Washington, Seattle, Washington State, United States.
Ian GlassDepartment of Biological Structure, University of Washington, Seattle, Washington State, United States.
Maureen NeitzDepartment of Ophthalmology, University of Washington, Seattle, Washington State, United States.
Jay NeitzDepartment of Ophthalmology, University of Washington, Seattle, Washington State, United States.
James TaylorDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States.
Robert J JohnstonDepartment of Biology, Johns Hopkins University, Baltimore, Maryland, United States.ORCID 0000-0002-5775-6218
Johns Hopkins University · USUniversity of Washington · US

Funding

Vision Research CoreP30EY001730 · NEI · UNIVERSITY OF WASHINGTON · PI Jay Neitz · 1985 to 2026
$23.5M
LABORATORY OF DEVELOPMENTAL BIOLOGYR24HD000836 · NICHD · UNIVERSITY OF WASHINGTON · PI Ian Amos Glass · 1995 to 2026
$16.9M
Supplement to EY021482 to carry out a screen for retinal regeneration using CRISPR-Cas9 gene activation.R01EY021482 · NEI · UNIVERSITY OF WASHINGTON · PI THOMAS A REH · 2011 to 2026
$6.3M
Function and fitness consequences of human genetic variationR35GM133747 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Rajiv Champion McCoy · 2019 to 2026
$3.3M
Cone subtype specification in human retinas and organoidsR01EY030872 · NEI · JOHNS HOPKINS UNIVERSITY · PI JOHNSTON, ROBERT JOHN · 2020 to 2023
$2.1M
Myopia: the role of cone opsin mutations & glasses that control axial elongationR01EY021242 · NEI · UNIVERSITY OF WASHINGTON · PI NEITZ, JAY · 2011 to 2015
$2.0M
Specification of green and red cone cells in the human eyeF31EY029157 · NEI · JOHNS HOPKINS UNIVERSITY · PI HADYNIAK, SARAH E. · 2019 to 2020
$91k
NEI NIH HHS F31 EY029157NEI NIH HHS P30 EY001730NEI NIH HHS R01 EY021242NEI NIH HHS R01 EY021482NEI NIH HHS R01 EY030872NICHD NIH HHS R24 HD000836NIGMS NIH HHS R35 GM133747
6 · The paper itself

Abstract

Trichromacy is unique to primates among placental mammals, enabled by blue (short/S), green (medium/M), and red (long/L) cones. In humans, great apes, and Old World monkeys, cones make a poorly understood choice between M and L cone subtype fates. To determine mechanisms specifying M and L cones, we developed an approach to visualize expression of the highly similar M- and L-opsin mRNAs. M-opsin was observed before L-opsin expression during early human eye development, suggesting that M cones are generated before L cones. In adult human tissue, the early-developing central retina contained a mix of M and L cones compared to the late-developing peripheral region, which contained a high proportion of L cones. Retinoic acid (RA)-synthesizing enzymes are highly expressed early in retinal development. High RA signaling early was sufficient to promote M cone fate and suppress L cone fate in retinal organoids. Across a human population sample, natural variation in the ratios of M and L cone subtypes was associated with a noncoding polymorphism in the NR2F2 gene, a mediator of RA signaling. Our data suggest that RA promotes M cone fate early in development to generate the pattern of M and L cones across the human retina.

Indexed as

PlacentaTretinoinAdultAnimalsFemaleHumansMammalsOpsinsPregnancyPrimatesRetinaRetinal Cone Photoreceptor CellsRod OpsinsOpsinsRod OpsinsTretinoin

Identifiers

PMID38206904
PMCPMC10783767
OpenAlexW4390755326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.