Evidence map›Paper›PMID 38206377›Full record

ArticleThe Journal of membrane biology2024

Effects of Chemical Fixatives on Kinetic Measurements of Biomolecular Interaction on Cell Membrane.

Tianbao Dong, Shengyang Wan, Yanhui Wang, Yaru Fu, Pengcheng Wang

Abstract read
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In one paragraph

Article in The Journal of membrane biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Tianbao DongSchool of Chemistry and Chemical Engineering, University of Jinan, Jinan, Shandong, 250022, P. R. China.
Shengyang WanSchool of Chemistry and Chemical Engineering, University of Jinan, Jinan, Shandong, 250022, P. R. China.
Yanhui WangSchool of Chemistry and Chemical Engineering, University of Jinan, Jinan, Shandong, 250022, P. R. China.
Yaru FuSchool of Biological Science and Technology, University of Jinan, Jinan, Shandong, 250022, P. R. China.
Pengcheng WangSchool of Chemistry and Chemical Engineering, University of Jinan, Jinan, Shandong, 250022, P. R. China. pc.wang@hotmail.com.
University of Jinan · CN

Funding

National Natural Science Foundation of China 21906065Natural Science Foundation of Shandong Province ZR2021QC044Natural Science Foundation of Shandong Province ZR2022QB126
6 · The paper itself

Abstract

Understanding the interaction between ligands and membrane proteins is important for drug design and optimization. Although investigation using live cells is desirable, it is not feasible in some circumstances and cell fixation is performed to reduce cell motion and degradation. This study compared the effects of five fixatives, i.e., formaldehyde vapor (FV), paraformaldehyde (PFA), acetone, methanol, and ethanol, on kinetic measurements via the LigandTracer method. We found that all five fixatives exerted insignificant effects on lectin-glycan interaction. However, antibody-receptor interaction is markedly perturbed by coagulant fixatives. The acetone fixation changed the binding of the anti-human epidermal growth factor receptor 2 (HER2) antibody to HER2 on the cell membrane from a 1:2 to a 1:1 binding model, while methanol and ethanol abolished the antibody binding possibly by removal of the HER2 receptors on the cell membrane. The capability of binding was retained when methanol fixation was performed at lower temperatures, albeit with a binding model of 1:1 instead. Moreover, whereas cell morphology does not exert a substantial impact on lectin-glycan interaction, it can indeed modify the binding model of antibody-receptor interaction. Our results provided insights into the selection of fixatives for cell-based kinetic studies.

Indexed as

AcetoneMethanolCell MembraneEthanolFixativesKineticsLectinsPolysaccharidesAcetoneEthanolFixativesLectinsMethanolPolysaccharidesCell fixationKineticsLigand bindingLigandTracerMembrane protein

Identifiers

PMID38206377
OpenAlexW4390743473

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.