Evidence map›Paper›PMID 38205032›Full record

ArticlePNAS nexus2024

Evolution of hierarchy and irreversibility in theoretical cell differentiation model.

Yoshiyuki T Nakamura, Yusuke Himeoka, Nen Saito, Chikara Furusawa

Abstract read
In one paragraph

Article in PNAS nexus, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yoshiyuki T NakamuraDepartment of Physics, The University of Tokyo, Bunkyo-ku 113-0033, Japan.ORCID https://orcid.org/0009-0007-7304-5065
Yusuke HimeokaUniversal Biology Institute, The University of Tokyo, Bunkyo-ku 113-0033, Japan.ORCID https://orcid.org/0000-0001-8545-1625
Nen SaitoGraduate School of Integrated Sciences for Life, Hiroshima University, Higashihiroshima 739-8526, Japan.ORCID https://orcid.org/0000-0002-8317-9389
Chikara FurusawaDepartment of Physics, The University of Tokyo, Bunkyo-ku 113-0033, Japan.ORCID https://orcid.org/0000-0003-3554-4975

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The process of cell differentiation in multicellular organisms is characterized by hierarchy and irreversibility in many cases. However, the conditions and selection pressures that give rise to these characteristics remain poorly understood. By using a mathematical model, here we show that the network of differentiation potency (differentiation diagram) becomes necessarily hierarchical and irreversible by increasing the number of terminally differentiated states under certain conditions. The mechanisms generating these characteristics are clarified using geometry in the cell state space. The results demonstrate that the hierarchical organization and irreversibility can manifest independently of direct selection pressures associated with these characteristics, instead they appear to evolve as byproducts of selective forces favoring a diversity of differentiated cell types. The study also provides a new perspective on the structure of gene regulatory networks that produce hierarchical and irreversible differentiation diagrams. These results indicate some constraints on cell differentiation, which are expected to provide a starting point for theoretical discussion of the implicit limits and directions of evolution in multicellular organisms.

Indexed as

cell differentiationevolutionhierarchy and irreversibility

Identifiers

PMID38205032
PMCPMC10776358

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.